Information for 6-STYCTGCCAA (Motif 4)

T A C G G C A T A G T C G A T C C G A T A C T G T A G C G T A C G C T A T C G A
Reverse Opposite:
A G C T C G A T C A T G A T C G T G A C C G T A C T A G T C A G C G T A A T G C
p-value:1e-17
log p-value:-3.974e+01
Information Content per bp:1.455
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.96%
Number of Background Sequences with motif538.9
Percentage of Background Sequences with motif1.14%
Average Position of motif in Targets53.0 +/- 22.2bp
Average Position of motif in Background51.4 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.80
Offset:3
Orientation:forward strand
Alignment:STYCTGCCAA-
---TTGCCAAG
 T A C G G C A T A G T C G A T C C G A T A C T G T A G C G T A C G C T A T C G A A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:STYCTGCCAA
--GCTGTCAA
 T A C G G C A T A G T C G A T C C G A T A C T G T A G C G T A C G C T A T C G A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.74
Offset:2
Orientation:forward strand
Alignment:STYCTGCCAA--
--GGTGCCAAGT
 T A C G G C A T A G T C G A T C C G A T A C T G T A G C G T A C G C T A T C G A A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:STYCTGCCAA-
-VGCTGWCAVB
 T A C G G C A T A G T C G A T C C G A T A C T G T A G C G T A C G C T A T C G A A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

PH0140.1_Pknox1/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---STYCTGCCAA---
AAAGACCTGTCAATCC
 A C G T A C G T A C G T T A C G G C A T A G T C G A T C C G A T A C T G T A G C G T A C G C T A T C G A A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:STYCTGCCAA
--CCTGTCAA
 T A C G G C A T A G T C G A T C C G A T A C T G T A G C G T A C G C T A T C G A
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

PH0104.1_Meis2/Jaspar

Match Rank:7
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---STYCTGCCAA---
AAAGACCTGTCAATAC
 A C G T A C G T A C G T T A C G G C A T A G T C G A T C C G A T A C T G T A G C G T A C G C T A T C G A A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:STYCTGCCAA
--RHTGWCAR
 T A C G G C A T A G T C G A T C C G A T A C T G T A G C G T A C G C T A T C G A
A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.70
Offset:2
Orientation:forward strand
Alignment:STYCTGCCAA-
--CGTGCCAAG
 T A C G G C A T A G T C G A T C C G A T A C T G T A G C G T A C G C T A T C G A A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:STYCTGCCAA
----TGCCAA
 T A C G G C A T A G T C G A T C C G A T A C T G T A G C G T A C G C T A T C G A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A