Information for 17-CCTTCGTGAT (Motif 38)

G T A C G T A C C G A T A C G T T A G C A T C G A C G T T C A G C G T A A C G T
Reverse Opposite:
C G T A C G A T A G T C G T C A A T G C A T C G C G T A C G T A A C T G C A T G
p-value:1e-7
log p-value:-1.624e+01
Information Content per bp:1.731
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif122.5
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets58.1 +/- 25.6bp
Average Position of motif in Background50.3 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTTCGTGAT
CCTTTGTT--
 G T A C G T A C C G A T A C G T T A G C A T C G A C G T T C A G C G T A A C G T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

PB0108.1_Atf1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCTTCGTGAT--
NTTATTCGTCATNC
 A C G T A C G T G T A C G T A C C G A T A C G T T A G C A T C G A C G T T C A G C G T A A C G T A C G T A C G T
C A T G G C A T G C A T T C G A G A C T C A G T A G T C T A C G G A C T G A T C T C G A A G C T G A C T A T G C

PB0161.1_Rxra_2/Jaspar

Match Rank:3
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------CCTTCGTGAT
NNNNCAACCTTCGNGA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T A C C G A T A C G T T A G C A T C G A C G T T C A G C G T A A C G T
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTTCGTGAT
CCWTTGTY--
 G T A C G T A C C G A T A C G T T A G C A T C G A C G T T C A G C G T A A C G T
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Atf1/MA0604.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCTTCGTGAT
--TACGTCAT
 G T A C G T A C C G A T A C G T T A G C A T C G A C G T T C A G C G T A A C G T
A C G T A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCTTCGTGAT---
ACATTCATGACACG
 A C G T G T A C G T A C C G A T A C G T T A G C A T C G A C G T T C A G C G T A A C G T A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTTCGTGAT
CCTTTGTTTT
 G T A C G T A C C G A T A C G T T A G C A T C G A C G T T C A G C G T A A C G T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

PB0136.1_IRC900814_2/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCTTCGTGAT-
ATGGAAAGTCGTAAAA
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C C G A T A C G T T A G C A T C G A C G T T C A G C G T A A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTTCGTGAT
CCWTTGTYYB
 G T A C G T A C C G A T A C G T T A G C A T C G A C G T T C A G C G T A A C G T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTTCGTGAT
GCTTCC----
 G T A C G T A C C G A T A C G T T A G C A T C G A C G T T C A G C G T A A C G T
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T