Information for 3-TTTTATGAGS (Motif 3)

C G A T A C G T A C G T A G C T C T G A A C G T A C T G C T G A A T C G A T G C
Reverse Opposite:
T A C G T A G C G A C T G T A C C G T A A G C T T C G A C G T A C G T A G C T A
p-value:1e-24
log p-value:-5.557e+01
Information Content per bp:1.744
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif10.25%
Number of Background Sequences with motif1138.1
Percentage of Background Sequences with motif2.41%
Average Position of motif in Targets47.5 +/- 24.4bp
Average Position of motif in Background49.2 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TTTTATGAGS
TTTTATTRGN
 C G A T A C G T A C G T A G C T C T G A A C G T A C T G C T G A A T C G A T G C
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.92
Offset:0
Orientation:forward strand
Alignment:TTTTATGAGS
TTTTATKRGG
 C G A T A C G T A C G T A G C T C T G A A C G T A C T G C T G A A T C G A T G C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGS
NTTTTATTGG-
 A C G T C G A T A C G T A C G T A G C T C T G A A C G T A C T G C T G A A T C G A T G C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGS
NTTTTATGAC-
 A C G T C G A T A C G T A C G T A G C T C T G A A C G T A C T G C T G A A T C G A T G C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TTTTATGAGS
TTTTATTGC-
 C G A T A C G T A C G T A G C T C T G A A C G T A C T G C T G A A T C G A T G C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATGAGS
DGWTTTATGRCN
 A C G T A C G T C G A T A C G T A C G T A G C T C T G A A C G T A C T G C T G A A T C G A T G C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGS
NTTTTATTACN
 A C G T C G A T A C G T A C G T A G C T C T G A A C G T A C T G C T G A A T C G A T G C
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGS
TTTTTATTGG-
 A C G T C G A T A C G T A C G T A G C T C T G A A C G T A C T G C T G A A T C G A T G C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:9
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATGAGS---
NAATTTTACGAGNTNN
 A C G T A C G T A C G T C G A T A C G T A C G T A G C T C T G A A C G T A C T G C T G A A T C G A T G C A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TTTTATGAGS-
TTTTATGGCTN
 C G A T A C G T A C G T A G C T C T G A A C G T A C T G C T G A A T C G A T G C A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T