Information for 16-ARAGCWGCTRGCA (Motif 23)

C G T A C T G A C T G A A C T G A T G C C G T A A T C G A G T C A G C T C T G A T A C G G T A C C G T A
Reverse Opposite:
A C G T A C T G A T G C G A C T C T G A A C T G A T G C C G A T A T C G G T A C A G C T G A C T A C G T
p-value:1e-10
log p-value:-2.470e+01
Information Content per bp:1.777
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif18.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets37.0 +/- 23.9bp
Average Position of motif in Background37.4 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ARAGCWGCTRGCA
--ANCAGCTG---
 C G T A C T G A C T G A A C T G A T G C C G T A A T C G A G T C A G C T C T G A T A C G G T A C C G T A
A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ARAGCWGCTRGCA
--AGCAGCTGCT-
 C G T A C T G A C T G A A C T G A T G C C G T A A T C G A G T C A G C T C T G A T A C G G T A C C G T A
A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ARAGCWGCTRGCA
-CAGCAGCTGN--
 C G T A C T G A C T G A A C T G A T G C C G T A A T C G A G T C A G C T C T G A T A C G G T A C C G T A
A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ARAGCWGCTRGCA
NNAGCAGCTGCT-
 C G T A C T G A C T G A A C T G A T G C C G T A A T C G A G T C A G C T C T G A T A C G G T A C C G T A
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ARAGCWGCTRGCA
-NAACAGCTGG--
 C G T A C T G A C T G A A C T G A T G C C G T A A T C G A G T C A G C T C T G A T A C G G T A C C G T A
A C G T C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ARAGCWGCTRGCA--
NNNNAGCAGCTGCTGAN
 A C G T A C G T C G T A C T G A C T G A A C T G A T G C C G T A A T C G A G T C A G C T C T G A T A C G G T A C C G T A A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ARAGCWGCTRGCA-
--NVCAGCTGBBNN
 C G T A C T G A C T G A A C T G A T G C C G T A A T C G A G T C A G C T C T G A T A C G G T A C C G T A A C G T
A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ARAGCWGCTRGCA----
-AAGCACCTGTCAATAT
 C G T A C T G A C T G A A C T G A T G C C G T A A T C G A G T C A G C T C T G A T A C G G T A C C G T A A C G T A C G T A C G T A C G T
A C G T G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ARAGCWGCTRGCA
VNAVCAGCTGGC-
 C G T A C T G A C T G A A C T G A T G C C G T A A T C G A G T C A G C T C T G A T A C G G T A C C G T A
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ARAGCWGCTRGCA
--AACAGCTG---
 C G T A C T G A C T G A A C T G A T G C C G T A A T C G A G T C A G C T C T G A T A C G G T A C C G T A
A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G A C G T A C G T A C G T