Information for 12-CTATTGCCATAGA (Motif 17)

A G T C A C G T C G T A A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T G A A C T G C G T A
Reverse Opposite:
A C G T A G T C A G C T C G T A A C G T A C T G A C T G G A T C C G T A G T C A A C G T C G T A C T A G
p-value:1e-11
log p-value:-2.571e+01
Information Content per bp:1.930
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.2 +/- 27.1bp
Average Position of motif in Background51.2 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F4/MA0789.1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTATTGCCATAGA
--ATTTGCATA--
 A G T C A C G T C G T A A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T G A A C T G C G T A
A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTATTGCCATAGA
--ATTTGCATA--
 A G T C A C G T C G T A A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T G A A C T G C G T A
A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTATTGCCATAGA----
---TTGCCATGGCAACC
 A G T C A C G T C G T A A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T G A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTATTGCCATAGA----
---TTGCCATGGCAACN
 A G T C A C G T C G T A A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T G A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

FOXB1/MA0845.1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTATTGCCATAGA
ATATTTACATA--
 A G T C A C G T C G T A A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T G A A C T G C G T A
C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTATTGCCATAGA---
--GTTGCCATGGNAAC
 A G T C A C G T C G T A A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T G A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTATTGCCATAGA
---TTGCCAAG--
 A G T C A C G T C G T A A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T G A A C T G C G T A
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTATTGCCATAGA
BTVATTWGCATA--
 A C G T A G T C A C G T C G T A A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T G A A C T G C G T A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTATTGCCATAGA---
CGGTTGCCATGGCAAC
 A G T C A C G T C G T A A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T G A A C T G C G T A A C G T A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

POU2F1/MA0785.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTATTGCCATAGA
-AATTTGCATANT
 A G T C A C G T C G T A A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T G A A C T G C G T A
A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T