Information for 9-CTTGTCCTGCTTC (Motif 13)

A G T C A C G T A C G T T A C G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C T G T A G C C G T A A C T G C T A G C G T A A G T C C G T A C G T A A C T G
p-value:1e-11
log p-value:-2.754e+01
Information Content per bp:1.906
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.2 +/- 23.4bp
Average Position of motif in Background45.4 +/- 10.7bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.60
Offset:8
Orientation:forward strand
Alignment:CTTGTCCTGCTTC-
--------GCTTCC
 A G T C A C G T A C G T T A C G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

ZNF263/MA0528.1/Jaspar

Match Rank:2
Score:0.55
Offset:-8
Orientation:reverse strand
Alignment:--------CTTGTCCTGCTTC
TCCTCCTCCCCCTCCTCCTCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T T A C G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A G T C
G A C T G A T C G A T C G A C T G A T C G A T C G A C T A G T C G A T C G A T C G A T C A G T C A G C T A G T C G T A C C G A T A T G C G T A C G A C T A G T C G A T C

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:3
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------CTTGTCCTGCTTC
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T T A C G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A G T C
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

PB0200.1_Zfp187_2/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CTTGTCCTGCTTC
GAGCCCTTGTCCCTAA--
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T T A C G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A G T C
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTTGTCCTGCTTC
--TGACCTARTT-
 A G T C A C G T A C G T T A C G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A G T C
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CTTGTCCTGCTTC
TGACCTTGACCT-----
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T T A C G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A G T C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CTTGTCCTGCTTC----
--TNTCCTGCTGTGNNG
 A G T C A C G T A C G T T A C G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CTTGTCCTGCTTC--
-TTGACCTANTTATN
 A G T C A C G T A C G T T A C G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A G T C A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CTTGTCCTGCTTC
TGACCTTGACCT-----
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T T A C G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A G T C
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CTTGTCCTGCTTC----
--TCNCCTGCTGNGNNN
 A G T C A C G T A C G T T A C G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G