Information for 3-CATTTACARDGAYATT (Motif 5)

T A G C C G T A A G C T A C G T A C G T C G T A A G T C C G T A T C A G C A G T C T A G C G T A A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A T G C A A C G T T C A G A C G T A G T C G T A C A G T C A C G T A C T G C G A T C G T A G T C A C T G A C G A T A C T G
p-value:1e-16
log p-value:-3.775e+01
Information Content per bp:1.753
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.2 +/- 31.7bp
Average Position of motif in Background73.4 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox1/MA0870.1/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CATTTACARDGAYATT---
----AACAATGNTATTGTT
 T A G C C G T A A G C T A C G T A C G T C G T A A G T C C G T A T C A G C A G T C T A G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CATTTACARDGAYATT-
WNAGTCADAVTGAAACTN
 A C G T T A G C C G T A A G C T A C G T A C G T C G T A A G T C C G T A T C A G C A G T C T A G C G T A A G T C C G T A A C G T A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CATTTACARDGAYATT
-----ACAAAG-----
 T A G C C G T A A G C T A C G T A C G T C G T A A G T C C G T A T C A G C A G T C T A G C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CATTTACARDGAYATT
TCNCTTTACAGCGNNNT-
 A C G T A C G T T A G C C G T A A G C T A C G T A C G T C G T A A G T C C G T A T C A G C A G T C T A G C G T A A G T C C G T A A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CATTTACARDGAYATT--
-------AAGGATATNTN
 T A G C C G T A A G C T A C G T A C G T C G T A A G T C C G T A T C A G C A G T C T A G C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PH0085.1_Irx4/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CATTTACARDGAYATT
NNTTTTACATGTANNNT
 A C G T T A G C C G T A A G C T A C G T A C G T C G T A A G T C C G T A T C A G C A G T C T A G C G T A A G T C C G T A A C G T A C G T
G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CATTTACARDGAYATT
TCNNTTTACAGCGNNNT-
 A C G T A C G T T A G C C G T A A G C T A C G T A C G T C G T A A G T C C G T A T C A G C A G T C T A G C G T A A G T C C G T A A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CATTTACARDGAYATT
TCNNTTTACAGCGNNNT-
 A C G T A C G T T A G C C G T A A G C T A C G T A C G T C G T A A G T C C G T A T C A G C A G T C T A G C G T A A G T C C G T A A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T

Stat6/MA0520.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CATTTACARDGAYATT
CATTTCCTGAGAAAT-
 T A G C C G T A A G C T A C G T A C G T C G T A A G T C C G T A T C A G C A G T C T A G C G T A A G T C C G T A A C G T A C G T
A T G C C G T A A G C T A C G T C G A T G T A C G A T C C G A T T A C G C T G A C A T G C G T A C T G A T G C A G A C T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CATTTACARDGAYATT
ANTNTTACATGTATNTA
 A C G T T A G C C G T A A G C T A C G T A C G T C G T A A G T C C G T A T C A G C A G T C T A G C G T A A G T C C G T A A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A