Information for 5-CAGGCAGCCTTGG (Motif 7)

A T G C C G T A A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G
Reverse Opposite:
A T G C A G T C G T C A G T C A A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C G T A T C G
p-value:1e-11
log p-value:-2.698e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.0 +/- 19.3bp
Average Position of motif in Background46.7 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCAGCCTTGG-
SCAGYCADGCATGAC
 A C G T A T G C C G T A A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAGGCAGCCTTGG
----CAGCC----
 A T G C C G T A A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGGCAGCCTTGG--
GCAGCCAAGCGTGACN
 A C G T A T G C C G T A A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CAGGCAGCCTTGG
---BCAGACWA--
 A T G C C G T A A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CAGGCAGCCTTGG
ACAGGAAGTG----
 A C G T A T G C C G T A A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CAGGCAGCCTTGG
NNNTTAGGTAGCNTNT-
 A C G T A C G T A C G T A C G T A T G C C G T A A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGGCAGCCTTGG
AACAGGAAGT-----
 A C G T A C G T A T G C C G T A A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCAGCCTTGG
TGAGTCAGCA----
 A C G T A T G C C G T A A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCAGCCTTGG
CCAGACAG------
 A C G T A T G C C G T A A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CAGGCAGCCTTGG
CTGGCAGNCTGCCA---
 A C G T A C G T A C G T A C G T A T G C C G T A A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T A C G T