Information for 2-SCDGGAACAA (Motif 2)

A T G C G A T C C G T A C T A G A C T G C G T A T C G A G T A C C G T A T C G A
Reverse Opposite:
A G C T G C A T A C T G A G C T A C G T A G T C G A T C G C A T C T A G T A C G
p-value:1e-46
log p-value:-1.071e+02
Information Content per bp:1.623
Number of Target Sequences with motif219.0
Percentage of Target Sequences with motif28.37%
Number of Background Sequences with motif4532.6
Percentage of Background Sequences with motif9.88%
Average Position of motif in Targets48.8 +/- 26.7bp
Average Position of motif in Background49.2 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:SCDGGAACAA
CCAGGAACAG
 A T G C G A T C C G T A C T A G A C T G C G T A T C G A G T A C C G T A T C G A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.78
Offset:2
Orientation:forward strand
Alignment:SCDGGAACAA--
--TGGAACAGMA
 A T G C G A T C C G T A C T A G A C T G C G T A T C G A G T A C C G T A T C G A A C G T A C G T
A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

NFATC2/MA0152.1/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:SCDGGAACAA
--TGGAAAA-
 A T G C G A T C C G T A C T A G A C T G C G T A T C G A G T A C C G T A T C G A
A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:SCDGGAACAA------
TTTAGAACAATAAAAT
 A T G C G A T C C G T A C T A G A C T G C G T A T C G A G T A C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:SCDGGAACAA---
---GGAACAAAGR
 A T G C G A T C C G T A C T A G A C T G C G T A T C G A G T A C C G T A T C G A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:SCDGGAACAA------
TTAAGAACAATAAATT
 A T G C G A T C C G T A C T A G A C T G C G T A T C G A G T A C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0173.1_Sox21_2/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-SCDGGAACAA------
NNNNNGAACAATTGANN
 A C G T A T G C G A T C C G T A C T A G A C T G C G T A T C G A G T A C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:SCDGGAACAA----
----GAACAATGGN
 A T G C G A T C C G T A C T A G A C T G C G T A T C G A G T A C C G T A T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:SCDGGAACAA-------
ATAAGAACAAAGGACTA
 A T G C G A T C C G T A C T A G A C T G C G T A T C G A G T A C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:SCDGGAACAA
NNTGGAAANN
 A T G C G A T C C G T A C T A G A C T G C G T A T C G A G T A C C G T A T C G A
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T