Information for 10-CTGGCAGGCC (Motif 19)

A G T C C G A T C A T G T A C G T A G C G C T A C T A G T A C G G A T C G A T C
Reverse Opposite:
C T A G C T A G A T G C G A T C C G A T A T C G A T G C G T A C G C T A T C A G
p-value:1e-8
log p-value:-1.881e+01
Information Content per bp:1.535
Number of Target Sequences with motif177.0
Percentage of Target Sequences with motif22.93%
Number of Background Sequences with motif6931.3
Percentage of Background Sequences with motif15.11%
Average Position of motif in Targets50.4 +/- 26.7bp
Average Position of motif in Background49.5 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGGCC
CTTGGCAA---
 A C G T A G T C C G A T C A T G T A C G T A G C G C T A C T A G T A C G G A T C G A T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGGCC
VBTGWCAGCB-
 A C G T A G T C C G A T C A T G T A C G T A G C G C T A C T A G T A C G G A T C G A T C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGGCC
NTTGGCANN--
 A C G T A G T C C G A T C A T G T A C G T A G C G C T A C T A G T A C G G A T C G A T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTGGCAGGCC
TTGGCA----
 A G T C C G A T C A T G T A C G T A G C G C T A C T A G T A C G G A T C G A T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGGCC
TNNGGGCAG---
 A C G T A C G T A G T C C G A T C A T G T A C G T A G C G C T A C T A G T A C G G A T C G A T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTGGCAGGCC
GGTCTGGCAT---
 A C G T A C G T A C G T A G T C C G A T C A T G T A C G T A G C G C T A C T A G T A C G G A T C G A T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CTGGCAGGCC--------
----CAGGCCNNGGCCNN
 A G T C C G A T C A T G T A C G T A G C G C T A C T A G T A C G G A T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGGCAGGCC----
CTGGCAGNCTGCCA
 A G T C C G A T C A T G T A C G T A G C G C T A C T A G T A C G G A T C G A T C A C G T A C G T A C G T A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTGGCAGGCC-
---CNAGGCCT
 A G T C C G A T C A T G T A C G T A G C G C T A C T A G T A C G G A T C G A T C A C G T
A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGGCAGGCC
TTGACAGC--
 A G T C C G A T C A T G T A C G T A G C G C T A C T A G T A C G G A T C G A T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T