Information for 9-AGACAGCAGGAGC (Motif 13)

C G T A A C T G C G T A A G T C C G T A C T A G A G T C C G T A A C T G A C T G C G T A A C T G A G T C
Reverse Opposite:
C T A G A G T C A C G T G T A C A G T C A C G T A C T G A G T C A C G T A C T G C G A T A G T C A C G T
p-value:1e-8
log p-value:-1.977e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.6 +/- 13.4bp
Average Position of motif in Background61.4 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGACAGCAGGAGC
-CACAGCAGGGGG
 C G T A A C T G C G T A A G T C C G T A C T A G A G T C C G T A A C T G A C T G C G T A A C T G A G T C
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGACAGCAGGAGC
CCACACAGCAGGAGA
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C T A G A G T C C G T A A C T G A C T G C G T A A C T G A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGACAGCAGGAGC--
DCHCAGCAGGRGGCC
 C G T A A C T G C G T A A G T C C G T A C T A G A G T C C G T A A C T G A C T G C G T A A C T G A G T C A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGACAGCAGGAGC
GAGCACAGCAGGACA
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C T A G A G T C C G T A A C T G A C T G C G T A A C T G A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGACAGCAGGAGC
CCACACAGCAGGAGA
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C T A G A G T C C G T A A C T G A C T G C G T A A C T G A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGCAGGAGC
TGAGTCAGCA-----
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C T A G A G T C C G T A A C T G A C T G C G T A A C T G A G T C
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGACAGCAGGAGC--
---SDGCAGGTGCNS
 C G T A A C T G C G T A A G T C C G T A C T A G A G T C C G T A A C T G A C T G C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGACAGCAGGAGC
DCTCAGCAGG---
 C G T A A C T G C G T A A G T C C G T A C T A G A G T C C G T A A C T G A C T G C G T A A C T G A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGACAGCAGGAGC
-AACAGCTGCAG-
 C G T A A C T G C G T A A G T C C G T A C T A G A G T C C G T A A C T G A C T G C G T A A C T G A G T C
A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G A C G T

Myog/MA0500.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGACAGCAGGAGC
-GACAGCTGCAG-
 C G T A A C T G C G T A A G T C C G T A C T A G A G T C C G T A A C T G A C T G C G T A A C T G A G T C
A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T