Information for 6-CTTGGCAGAR (Motif 4)

A G T C G C A T C A G T A C T G A C T G T A G C C G T A T A C G C T G A T C A G
Reverse Opposite:
A G T C G A C T A T G C C G A T A T C G T G A C A G T C G T C A C G T A T C A G
p-value:1e-23
log p-value:-5.397e+01
Information Content per bp:1.678
Number of Target Sequences with motif105.0
Percentage of Target Sequences with motif13.50%
Number of Background Sequences with motif1997.3
Percentage of Background Sequences with motif4.36%
Average Position of motif in Targets48.0 +/- 26.2bp
Average Position of motif in Background50.0 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAGAR
NNTTGGCANN-
 A C G T A G T C G C A T C A G T A C T G A C T G T A G C C G T A T A C G C T G A T C A G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.88
Offset:1
Orientation:forward strand
Alignment:CTTGGCAGAR
-TTGGCA---
 A G T C G C A T C A G T A C T G A C T G T A G C C G T A T A C G C T G A T C A G
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAGAR
NTTGGCANN-
 A G T C G C A T C A G T A C T G A C T G T A G C C G T A T A C G C T G A T C A G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAGAR
CTTGGCAA--
 A G T C G C A T C A G T A C T G A C T G T A G C C G T A T A C G C T G A T C A G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAGAR
GGTTGGCAT--
 A C G T A G T C G C A T C A G T A C T G A C T G T A G C C G T A T A C G C T G A T C A G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CTTGGCAGAR-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A G T C G C A T C A G T A C T G A C T G T A G C C G T A T A C G C T G A T C A G A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAGAR
NGTGGGCAT--
 A C G T A G T C G C A T C A G T A C T G A C T G T A G C C G T A T A C G C T G A T C A G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAGAR
TNNGGGCAG--
 A C G T A G T C G C A T C A G T A C T G A C T G T A G C C G T A T A C G C T G A T C A G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTTGGCAGAR
-TTGACAGC-
 A G T C G C A T C A G T A C T G A C T G T A G C C G T A T A C G C T G A T C A G
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.67
Offset:-9
Orientation:forward strand
Alignment:---------CTTGGCAGAR
NNTGTTTATTTTGGCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C A T C A G T A C T G A C T G T A G C C G T A T A C G C T G A T C A G
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T A C G T A C G T