Information for 5-CYSTGCTGGCAGS (Motif 4)

G T A C G A T C A T G C C G A T A T C G A G T C A G C T A C T G A C T G G T A C C T G A A T C G T A G C
Reverse Opposite:
A T C G A T G C A G C T A C T G A G T C A G T C C T G A A C T G T A G C C G T A A T C G C T A G A C T G
p-value:1e-16
log p-value:-3.758e+01
Information Content per bp:1.722
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.83%
Number of Background Sequences with motif207.0
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets49.8 +/- 31.0bp
Average Position of motif in Background49.1 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CYSTGCTGGCAGS
---TNNGGGCAG-
 G T A C G A T C A T G C C G A T A T C G A G T C A G C T A C T G A C T G G T A C C T G A A T C G T A G C
A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CYSTGCTGGCAGS-
DCHCAGCAGGRGGCC
 A C G T G T A C G A T C A T G C C G A T A T C G A G T C A G C T A C T G A C T G G T A C C T G A A T C G T A G C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CYSTGCTGGCAGS
-----TTGGCA--
 G T A C G A T C A T G C C G A T A T C G A G T C A G C T A C T G A C T G G T A C C T G A A T C G T A G C
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CYSTGCTGGCAGS
NAACAGCTGG----
 A C G T G T A C G A T C A T G C C G A T A T C G A G T C A G C T A C T G A C T G G T A C C T G A A T C G T A G C
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CYSTGCTGGCAGS
----CTTGGCAA-
 G T A C G A T C A T G C C G A T A T C G A G T C A G C T A C T G A C T G G T A C C T G A A T C G T A G C
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CYSTGCTGGCAGS
----NTTGGCANN
 G T A C G A T C A T G C C G A T A T C G A G T C A G C T A C T G A C T G G T A C C T G A A T C G T A G C
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CYSTGCTGGCAGS
--GGTCTGGCAT-
 G T A C G A T C A T G C C G A T A T C G A G T C A G C T A C T G A C T G G T A C C T G A A T C G T A G C
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CYSTGCTGGCAGS
CACAGCAGGGGG-
 G T A C G A T C A T G C C G A T A T C G A G T C A G C T A C T G A C T G G T A C C T G A A T C G T A G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CYSTGCTGGCAGS
NAHCAGCTGD----
 A C G T G T A C G A T C A T G C C G A T A T C G A G T C A G C T A C T G A C T G G T A C C T G A A T C G T A G C
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CYSTGCTGGCAGS
---GGTTGGCAT-
 G T A C G A T C A T G C C G A T A T C G A G T C A G C T A C T G A C T G G T A C C T G A A T C G T A G C
A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T