Information for 10-TSTGTTGTCTTGGCAC (Motif 12)

A C G T A T C G A C G T T A C G C G A T A C G T A C T G A G C T A T G C A G C T A C G T A C T G A T C G A T G C T G C A A T G C
Reverse Opposite:
T A C G A C G T T A C G A T G C G T A C C G T A C T G A A T C G T C G A G T A C G T C A C G T A A G T C C G T A A T G C C G T A
p-value:1e-11
log p-value:-2.578e+01
Information Content per bp:1.727
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif22.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets47.3 +/- 19.7bp
Average Position of motif in Background47.8 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.65
Offset:8
Orientation:reverse strand
Alignment:TSTGTTGTCTTGGCAC-
--------NTTGGCANN
 A C G T A T C G A C G T T A C G C G A T A C G T A C T G A G C T A T G C A G C T A C G T A C T G A T C G A T G C T G C A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.64
Offset:9
Orientation:forward strand
Alignment:TSTGTTGTCTTGGCAC
---------TTGGCA-
 A C G T A T C G A C G T T A C G C G A T A C G T A C T G A G C T A T G C A G C T A C G T A C T G A T C G A T G C T G C A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:TSTGTTGTCTTGGCAC-
-------NNTTGGCANN
 A C G T A T C G A C G T T A C G C G A T A C G T A C T G A G C T A T G C A G C T A C G T A C T G A T C G A T G C T G C A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:TSTGTTGTCTTGGCAC
--------CTTGGCAA
 A C G T A T C G A C G T T A C G C G A T A C G T A C T G A G C T A T G C A G C T A C G T A C T G A T C G A T G C T G C A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

CREB3L1/MA0839.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TSTGTTGTCTTGGCAC
--TGATGACGTGGCAN
 A C G T A T C G A C G T T A C G C G A T A C G T A C T G A G C T A T G C A G C T A C G T A C T G A T C G A T G C T G C A A T G C
A C G T A C G T G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TSTGTTGTCTTGGCAC
--NGTTGCCATGGCAA
 A C G T A T C G A C G T T A C G C G A T A C G T A C T G A G C T A T G C A G C T A C G T A C T G A T C G A T G C T G C A A T G C
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TSTGTTGTCTTGGCAC
--GGTTGCCATGGCAA
 A C G T A T C G A C G T T A C G C G A T A C G T A C T G A G C T A T G C A G C T A C G T A C T G A T C G A T G C T G C A A T G C
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TSTGTTGTCTTGGCAC
-------GGTTGGCAT
 A C G T A T C G A C G T T A C G C G A T A C G T A C T G A G C T A T G C A G C T A C G T A C T G A T C G A T G C T G C A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TSTGTTGTCTTGGCAC-
-CGGTTGCCATGGCAAC
 A C G T A T C G A C G T T A C G C G A T A C G T A C T G A G C T A T G C A G C T A C G T A C T G A T C G A T G C T G C A A T G C A C G T
A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TSTGTTGTCTTGGCAC-
--KGTTGCCATGGCAAC
 A C G T A T C G A C G T T A C G C G A T A C G T A C T G A G C T A T G C A G C T A C G T A C T G A T C G A T G C T G C A A T G C A C G T
A C G T A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C