Information for 3-RAGTGACGGTCAC (Motif 3)

C T A G C T G A A C T G A C G T A C T G C G T A A G T C A T C G A C T G A G C T A G T C G T C A A G T C
Reverse Opposite:
A C T G A C G T C T A G C T G A A G T C A T G C A C T G A C G T A G T C G T C A A G T C A G C T G A T C
p-value:1e-11
log p-value:-2.663e+01
Information Content per bp:1.849
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.7 +/- 23.9bp
Average Position of motif in Background24.0 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RAGTGACGGTCAC
TGAGTGACAGSC--
 A C G T C T A G C T G A A C T G A C G T A C T G C G T A A G T C A T C G A C T G A G C T A G T C G T C A A G T C
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

PB0045.1_Myb_1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-RAGTGACGGTCAC---
NNNNTAACGGTTNNNAN
 A C G T C T A G C T G A A C T G A C G T A C T G C G T A A G T C A T C G A C T G A G C T A G T C G T C A A G T C A C G T A C G T A C G T
G C T A C T G A C G T A C G T A G A C T C T G A C G T A A G T C A T C G C A T G G A C T G A C T C A G T G T A C G T A C G C T A C G A T

PB0046.1_Mybl1_1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-RAGTGACGGTCAC---
NNANTAACGGTTNNNAN
 A C G T C T A G C T G A A C T G A C G T A C T G C G T A A G T C A T C G A C T G A G C T A G T C G T C A A G T C A C G T A C G T A C G T
G C T A C T G A C G T A C G A T G A C T C T G A T C G A A G T C A T C G C A T G G A C T G A C T C G A T G A C T G A T C G C T A C T G A

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RAGTGACGGTCAC
NCGTGACN-----
 C T A G C T G A A C T G A C G T A C T G C G T A A G T C A T C G A C T G A G C T A G T C G T C A A G T C
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--RAGTGACGGTCAC
NTGATTGACAGN---
 A C G T A C G T C T A G C T G A A C T G A C G T A C T G C G T A A G T C A T C G A C T G A G C T A G T C G T C A A G T C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-RAGTGACGGTCAC--
NNATTGACAGGTGCTT
 A C G T C T A G C T G A A C T G A C G T A C T G C G T A A G T C A T C G A C T G A G C T A G T C G T C A A G T C A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--RAGTGACGGTCAC
BTGABTGACAGS---
 A C G T A C G T C T A G C T G A A C T G A C G T A C T G C G T A A G T C A T C G A C T G A G C T A G T C G T C A A G T C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--RAGTGACGGTCAC
GAAAGTGAAAGT---
 A C G T A C G T C T A G C T G A A C T G A C G T A C T G C G T A A G T C A T C G A C T G A G C T A G T C G T C A A G T C
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---RAGTGACGGTCAC
AGAAAGTGAAAGTGA-
 A C G T A C G T A C G T C T A G C T G A A C T G A C G T A C T G C G T A A G T C A T C G A C T G A G C T A G T C G T C A A G T C
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RAGTGACGGTCAC
AGGTGHCAGACA-
 C T A G C T G A A C T G A C G T A C T G C G T A A G T C A T C G A C T G A G C T A G T C G T C A A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T