Information for 13-GCASCAGCAGGAG (Motif 22)

A T C G A T G C C T G A A T G C A G T C C G T A A C T G A T G C C T G A A T C G T A C G G T C A C T A G
Reverse Opposite:
A G T C A C G T A G T C A T G C A G C T A T C G A G T C A C G T A C T G T A C G A G C T A T C G A T G C
p-value:1e-7
log p-value:-1.778e+01
Information Content per bp:1.815
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.11%
Number of Background Sequences with motif168.3
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets43.1 +/- 25.6bp
Average Position of motif in Background54.2 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GCASCAGCAGGAG-
--CACAGCAGGGGG
 A T C G A T G C C T G A A T G C A G T C C G T A A C T G A T G C C T G A A T C G T A C G G T C A C T A G A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCASCAGCAGGAG---
-DCHCAGCAGGRGGCC
 A T C G A T G C C T G A A T G C A G T C C G T A A C T G A T G C C T G A A T C G T A C G G T C A C T A G A C G T A C G T A C G T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCASCAGCAGGAG-
CCACACAGCAGGAGA
 A C G T A T C G A T G C C T G A A T G C A G T C C G T A A C T G A T G C C T G A A T C G T A C G G T C A C T A G A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCASCAGCAGGAG
-DCTCAGCAGG--
 A T C G A T G C C T G A A T G C A G T C C G T A A C T G A T G C C T G A A T C G T A C G G T C A C T A G
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCASCAGCAGGAG-
CCACACAGCAGGAGA
 A C G T A T C G A T G C C T G A A T G C A G T C C G T A A C T G A T G C C T G A A T C G T A C G G T C A C T A G A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCASCAGCAGGAG------
GCCASCAGGGGGCGCYVNNG
 A C G T A T C G A T G C C T G A A T G C A G T C C G T A A C T G A T G C C T G A A T C G T A C G G T C A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCASCAGCAGGAG-
GAGCACAGCAGGACA
 A C G T A T C G A T G C C T G A A T G C A G T C C G T A A C T G A T G C C T G A A T C G T A C G G T C A C T A G A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCASCAGCAGGAG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A T C G A T G C C T G A A T G C A G T C C G T A A C T G A T G C C T G A A T C G T A C G G T C A C T A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCASCAGCAGGAG
-CAGCAGCTGN--
 A T C G A T G C C T G A A T G C A G T C C G T A A C T G A T G C C T G A A T C G T A C G G T C A C T A G
A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCASCAGCAGGAG
-NAACAGCTGG--
 A T C G A T G C C T G A A T G C A G T C C G T A A C T G A T G C C T G A A T C G T A C G G T C A C T A G
A C G T C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T