Information for 4-GCCCTTGAAGGGCTGA (Motif 14)

C T A G A T G C A T G C G A T C C G A T A C G T C A T G G T C A C T G A C A T G C T A G T C A G A G T C A G C T A C T G G T C A
Reverse Opposite:
C A G T T A G C C T G A C T A G A G T C G A T C G T A C A G C T C A G T G A T C T G C A C G T A C T A G A T C G T A C G A G T C
p-value:1e-9
log p-value:-2.073e+01
Information Content per bp:1.663
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.99%
Number of Background Sequences with motif119.8
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets48.0 +/- 25.0bp
Average Position of motif in Background50.9 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTGAAGGGCTGA
TGACCTTGAN-------
 A C G T C T A G A T G C A T G C G A T C C G A T A C G T C A T G G T C A C T G A C A T G C T A G T C A G A G T C A G C T A C T G G T C A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:GCCCTTGAAGGGCTGA
----------NGCTN-
 C T A G A T G C A T G C G A T C C G A T A C G T C A T G G T C A C T G A C A T G C T A G T C A G A G T C A G C T A C T G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCCCTTGAAGGGCTGA
---CTTGAGTGGCT--
 C T A G A T G C A T G C G A T C C G A T A C G T C A T G G T C A C T G A C A T G C T A G T C A G A G T C A G C T A C T G G T C A
A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:4
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:GCCCTTGAAGGGCTGA
--------NNNANTGA
 C T A G A T G C A T G C G A T C C G A T A C G T C A T G G T C A C T G A C A T G C T A G T C A G A G T C A G C T A C T G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTGAAGGGCTGA
TGACCTTGAV-------
 A C G T C T A G A T G C A T G C G A T C C G A T A C G T C A T G G T C A C T G A C A T G C T A G T C A G A G T C A G C T A C T G G T C A
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCCCTTGAAGGGCTGA
-CCTTTGAWGT-----
 C T A G A T G C A T G C G A T C C G A T A C G T C A T G G T C A C T G A C A T G C T A G T C A G A G T C A G C T A C T G G T C A
A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.50
Offset:6
Orientation:forward strand
Alignment:GCCCTTGAAGGGCTGA-
------AATTTGCTGAC
 C T A G A T G C A T G C G A T C C G A T A C G T C A T G G T C A C T G A C A T G C T A G T C A G A G T C A G C T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GCCCTTGAAGGGCTGA
-GTCATGCHTGRCTGS
 C T A G A T G C A T G C G A T C C G A T A C G T C A T G G T C A C T G A C A T G C T A G T C A G A G T C A G C T A C T G G T C A
A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTTGAAGGGCTGA
BNTGDCCTTG---------
 A C G T A C G T A C G T C T A G A T G C A T G C G A T C C G A T A C G T C A T G G T C A C T G A C A T G C T A G T C A G A G T C A G C T A C T G G T C A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:10
Score:0.50
Offset:6
Orientation:forward strand
Alignment:GCCCTTGAAGGGCTGA--
------AAAATGCTGACT
 C T A G A T G C A T G C G A T C C G A T A C G T C A T G G T C A C T G A C A T G C T A G T C A G A G T C A G C T A C T G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T