Information for 12-AGCCTATAAA (Motif 21)

C G T A C T A G T A G C A G T C A G C T T C G A A C G T G T C A C G T A C T G A
Reverse Opposite:
A G C T A C G T A C G T C G T A A G C T C T G A A C T G A C T G A G T C C G A T
p-value:1e-9
log p-value:-2.299e+01
Information Content per bp:1.847
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif35.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets50.0 +/- 26.7bp
Average Position of motif in Background44.9 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:AGCCTATAAA--
--CCAATAAAAC
 C G T A C T A G T A G C A G T C A G C T T C G A A C G T G T C A C G T A C T G A A C G T A C G T
A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:AGCCTATAAA--
--CCAATAAAAA
 C G T A C T A G T A G C A G T C A G C T T C G A A C G T G T C A C G T A C T G A A C G T A C G T
A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:AGCCTATAAA-
-CCYMATAAAA
 C G T A C T A G T A G C A G T C A G C T T C G A A C G T G T C A C G T A C T G A A C G T
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.73
Offset:3
Orientation:forward strand
Alignment:AGCCTATAAA--------
---GTATAAAAGGCGGGG
 C G T A C T A G T A G C A G T C A G C T T C G A A C G T G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.73
Offset:3
Orientation:forward strand
Alignment:AGCCTATAAA--------
---GTATAAAAGGCGGGG
 C G T A C T A G T A G C A G T C A G C T T C G A A C G T G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGCCTATAAA---
-NGYCATAAAWCH
 C G T A C T A G T A G C A G T C A G C T T C G A A C G T G T C A C G T A C T G A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGCCTATAAA-----
AACCCAATAAAATTCG
 A C G T C G T A C T A G T A G C A G T C A G C T T C G A A C G T G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AGCCTATAAA---
-GNCTATAAAAGG
 C G T A C T A G T A G C A G T C A G C T T C G A A C G T G T C A C G T A C T G A A C G T A C G T A C G T
A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGCCTATAAA-
-NCYAATAAAA
 C G T A C T A G T A G C A G T C A G C T T C G A A C G T G T C A C G T A C T G A A C G T
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGCCTATAAA-
-NGCAATTAAA
 C G T A C T A G T A G C A G T C A G C T T C G A A C G T G T C A C G T A C T G A A C G T
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A