Information for 5-CGCCCTAAAA (Motif 9)

A G T C C T A G A T G C A G T C A G T C A C G T G C T A G T C A G T C A G T C A
Reverse Opposite:
A C G T A C G T A C G T C G A T G T C A C T A G A C T G A T C G A G T C C T A G
p-value:1e-10
log p-value:-2.403e+01
Information Content per bp:1.844
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif22.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets30.4 +/- 25.6bp
Average Position of motif in Background53.6 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGCCCTAAAA-
-GTCATAAAAN
 A G T C C T A G A T G C A G T C A G T C A C G T G C T A G T C A G T C A G T C A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGCCCTAAAA--
NGYCATAAAWCH
 A G T C C T A G A T G C A G T C A G T C A C G T G C T A G T C A G T C A G T C A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PB0143.1_Klf7_2/Jaspar

Match Rank:3
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------CGCCCTAAAA
AAGCATACGCCCAACTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G A T G C A G T C A G T C A C G T G C T A G T C A G T C A G T C A
T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CGCCCTAAAA-
AAGCCCCCCAAAAAT
 A C G T A C G T A C G T A C G T A G T C C T A G A T G C A G T C A G T C A C G T G C T A G T C A G T C A G T C A A C G T
C T G A C T G A T C A G T A G C T A G C G T A C G T A C A G T C G A T C G C T A G C T A G C T A C G T A G T C A A G C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGCCCTAAAA
NGCAATTAAA
 A G T C C T A G A T G C A G T C A G T C A C G T G C T A G T C A G T C A G T C A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGCCCTAAAA
AAGCCATAAAA
 A C G T A G T C C T A G A T G C A G T C A G T C A C G T G C T A G T C A G T C A G T C A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CGCCCTAAAA----
AGAGCCATAAAATTCG
 A C G T A C G T A G T C C T A G A T G C A G T C A G T C A C G T G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGCCCTAAAA
-GCAATAAAA
 A G T C C T A G A T G C A G T C A G T C A C G T G C T A G T C A G T C A G T C A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CGCCCTAAAA
CTGCCCGCA--
 A C G T A G T C C T A G A T G C A G T C A G T C A C G T G C T A G T C A G T C A G T C A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CGCCCTAAAA-----
ACGGCCATAAAATTAAT
 A C G T A C G T A G T C C T A G A T G C A G T C A G T C A C G T G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T