Information for 6-KGTCASCYKMSTGTCA (Motif 13)

A C T G A T C G A C G T A G T C C G T A A T G C A G T C A G C T A C T G G T A C A T G C A C G T A C T G A G C T A G T C C T G A
Reverse Opposite:
A G C T A C T G C T G A A G T C C G T A A T C G A C T G G T A C C T G A A C T G A T C G A C G T A C T G C G T A A T G C G T A C
p-value:1e-8
log p-value:-1.896e+01
Information Content per bp:1.841
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.8 +/- 29.4bp
Average Position of motif in Background65.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARA(var.2)/MA0730.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-KGTCASCYKMSTGTCA
AGGTCATGCAAAGGTCA
 A C G T A C T G A T C G A C G T A G T C C G T A A T G C A G T C A G C T A C T G G T A C A T G C A C G T A C T G A G C T A G T C C T G A
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.63
Offset:9
Orientation:reverse strand
Alignment:KGTCASCYKMSTGTCA-
---------CCTGTCAA
 A C T G A T C G A C G T A G T C C G T A A T G C A G T C A G C T A C T G G T A C A T G C A C G T A C T G A G C T A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.63
Offset:10
Orientation:reverse strand
Alignment:KGTCASCYKMSTGTCA-
----------NTGTCAN
 A C T G A T C G A C G T A G T C C G T A A T G C A G T C A G C T A C T G G T A C A T G C A C G T A C T G A G C T A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-KGTCASCYKMSTGTCA
AGGTCAACTAAAGGTCA
 A C G T A C T G A T C G A C G T A G T C C G T A A T G C A G T C A G C T A C T G G T A C A T G C A C G T A C T G A G C T A G T C C T G A
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.61
Offset:9
Orientation:reverse strand
Alignment:KGTCASCYKMSTGTCA-
---------GCTGTCAA
 A C T G A T C G A C G T A G T C C G T A A T G C A G T C A G C T A C T G G T A C A T G C A C G T A C T G A G C T A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-KGTCASCYKMSTGTCA-
RGGTCADNNAGAGGTCAV
 A C G T A C T G A T C G A C G T A G T C C G T A A T G C A G T C A G C T A C T G G T A C A T G C A C G T A C T G A G C T A G T C C T G A A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--KGTCASCYKMSTGTCA---
NTTMRCACNNNVSTGYKAANT
 A C G T A C G T A C T G A T C G A C G T A G T C C G T A A T G C A G T C A G C T A C T G G T A C A T G C A C G T A C T G A G C T A G T C C T G A A C G T A C G T A C G T
G C A T A G C T G A C T T G C A C T G A T A G C C T G A A T G C G A T C A G C T T G C A T C A G A T C G G A C T T A C G G A C T A C T G C T G A C T G A G C T A G C A T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.59
Offset:11
Orientation:forward strand
Alignment:KGTCASCYKMSTGTCA---
-----------TGTCANYT
 A C T G A T C G A C G T A G T C C G T A A T G C A G T C A G C T A C T G G T A C A T G C A C G T A C T G A G C T A G T C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.59
Offset:8
Orientation:forward strand
Alignment:KGTCASCYKMSTGTCA--
--------VGCTGWCAVB
 A C T G A T C G A C G T A G T C C G T A A T G C A G T C A G C T A C T G G T A C A T G C A C G T A C T G A G C T A G T C C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:KGTCASCYKMSTGTCA
-GTCWGCTGTYYCTCT
 A C T G A T C G A C G T A G T C C G T A A T G C A G T C A G C T A C T G G T A C A T G C A C G T A C T G A G C T A G T C C T G A
A C G T C T A G A C G T A G T C C G T A A C T G A G T C G C A T A C T G G C A T A G T C G A C T G A T C G C A T A G T C A G C T