Information for 12-AGGTTTTATT (Motif 17)

C G T A A C T G T C A G A C G T A C G T A C G T A G C T T C G A A C G T A C G T
Reverse Opposite:
C G T A C G T A A G C T C T G A C G T A G T C A T G C A A G T C G T A C C G A T
p-value:1e-8
log p-value:-2.029e+01
Information Content per bp:1.847
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif74.1
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets37.8 +/- 25.6bp
Average Position of motif in Background47.9 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-AGGTTTTATT-----
NNANTTTTATTGGNNN
 A C G T C G T A A C T G T C A G A C G T A C G T A C G T A G C T T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:AGGTTTTATT--
--NTTTTATTGG
 C G T A A C T G T C A G A C G T A C G T A C G T A G C T T C G A A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:AGGTTTTATT--
--TTTTTATTGG
 C G T A A C T G T C A G A C G T A C G T A C G T A G C T T C G A A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:AGGTTTTATT--
--NTTTTATTGG
 C G T A A C T G T C A G A C G T A C G T A C G T A G C T T C G A A C G T A C G T A C G T A C G T
A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:AGGTTTTATT---
---TTTTATTRGN
 C G T A A C T G T C A G A C G T A C G T A C G T A G C T T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:AGGTTTTATT--
---TTTTATTGC
 C G T A A C T G T C A G A C G T A C G T A C G T A G C T T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--AGGTTTTATT-----
NTNAATTTTATTGNATT
 A C G T A C G T C G T A A C T G T C A G A C G T A C G T A C G T A G C T T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AGGTTTTATT---
--NTTTTATTACN
 C G T A A C T G T C A G A C G T A C G T A C G T A G C T T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AGGTTTTATT--
--NTTTTATGAC
 C G T A A C T G T C A G A C G T A C G T A C G T A G C T T C G A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-AGGTTTTATT-----
NNAATTTTATTGGNTN
 A C G T C G T A A C T G T C A G A C G T A C G T A C G T A G C T T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T