Information for 10-AGCATGAAGAARA (Motif 19)

C G T A A T C G A G T C G T C A C G A T A C T G C G T A C G T A A C T G G T C A G T C A T C G A C T G A
Reverse Opposite:
A G C T A G C T A C G T A C G T G T A C A C G T A C G T G T A C C G T A A C G T A C T G A T G C A C G T
p-value:1e-8
log p-value:-1.925e+01
Information Content per bp:1.784
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif27.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets57.8 +/- 29.0bp
Average Position of motif in Background52.8 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGCATGAAGAARA
NNTNTCATGAATGT--
 A C G T A C G T A C G T C G T A A T C G A G T C G T C A C G A T A C T G C G T A C G T A A C T G G T C A G T C A T C G A C T G A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:2
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----AGCATGAAGAARA--
GAAGTANCACGAATNMRAGT
 A C G T A C G T A C G T A C G T A C G T C G T A A T C G A G T C G T C A C G A T A C T G C G T A C G T A A C T G G T C A G T C A T C G A C T G A A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCATGAAGAARA
AVCAGGAAGT---
 C G T A A T C G A G T C G T C A C G A T A C T G C G T A C G T A A C T G G T C A G T C A T C G A C T G A
C G T A T A G C T A G C T G C A A C T G C T A G C G T A C G T A T C A G G A C T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGCATGAAGAARA--
NTTNTATGAATGTGNNC
 A C G T A C G T C G T A A T C G A G T C G T C A C G A T A C T G C G T A C G T A A C T G G T C A G T C A T C G A C T G A A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGCATGAAGAARA
ANCAGGAAGT---
 C G T A A T C G A G T C G T C A C G A T A C T G C G T A C G T A A C T G G T C A G T C A T C G A C T G A
C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGCATGAAGAARA-
TACTGGAAAAAAAA
 C G T A A T C G A G T C G T C A C G A T A C T G C G T A C G T A A C T G G T C A G T C A T C G A C T G A A C G T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A

ELF3/MA0640.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGCATGAAGAARA
AACCCGGAAGTAA-
 A C G T C G T A A T C G A G T C G T C A C G A T A C T G C G T A C G T A A C T G G T C A G T C A T C G A C T G A
G C T A G C T A T A G C T A G C T G A C C T A G A C T G T C G A G C T A C T A G G A C T C T G A C T G A A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGCATGAAGAARA
---ATGMATATDC
 C G T A A T C G A G T C G T C A C G A T A C T G C G T A C G T A A C T G G T C A G T C A T C G A C T G A
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Pax6/MA0069.1/Jaspar

Match Rank:9
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------AGCATGAAGAARA
AANTCATGCGTGAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T C G A G T C G T C A C G A T A C T G C G T A C G T A A C T G G T C A G T C A T C G A C T G A
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T

ELF5/MA0136.2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGCATGAAGAARA
ACCCGGAAGTA--
 C G T A A T C G A G T C G T C A C G A T A C T G C G T A C G T A A C T G G T C A G T C A T C G A C T G A
C G T A T G A C T A G C T G A C C A T G C A T G G T C A G C T A T C A G G A C T C T G A A C G T A C G T