Information for 5-TTTGAAACTTTKAATT (Motif 6)

A G C T A G C T C A G T C T A G C T G A G T C A C G T A A G T C C G A T A G C T C A G T C A G T C T G A G T C A C G A T A C G T
Reverse Opposite:
C G T A C G T A A C G T G A C T G T C A G T C A T C G A G C T A T C A G A C G T C A G T G A C T A G T C G T C A C T G A C T G A
p-value:1e-12
log p-value:-2.774e+01
Information Content per bp:1.646
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.62%
Number of Background Sequences with motif268.9
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets51.4 +/- 23.7bp
Average Position of motif in Background50.1 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTTGAAACTTTKAATT
TTTGAAACCG------
 A G C T A G C T C A G T C T A G C T G A G T C A C G T A A G T C C G A T A G C T C A G T C A G T C T G A G T C A C G A T A C G T
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:2
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TTTGAAACTTTKAATT
NTTGATACATT-----
 A G C T A G C T C A G T C T A G C T G A G T C A C G T A A G T C C G A T A G C T C A G T C A G T C T G A G T C A C G A T A C G T
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TTTGAAACTTTKAATT
CCTTTGATGT--------
 A C G T A C G T A G C T A G C T C A G T C T A G C T G A G T C A C G T A A G T C C G A T A G C T C A G T C A G T C T G A G T C A C G A T A C G T
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TTTGAAACTTTKAATT
ATTTGAATT--------
 A C G T A G C T A G C T C A G T C T A G C T G A G T C A C G T A A G T C C G A T A G C T C A G T C A G T C T G A G T C A C G A T A C G T
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TTTGAAACTTTKAATT
-TTGACAG--------
 A G C T A G C T C A G T C T A G C T G A G T C A C G T A A G T C C G A T A G C T C A G T C A G T C T G A G T C A C G A T A C G T
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MIXL1/MA0662.1/Jaspar

Match Rank:6
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:TTTGAAACTTTKAATT---
---------NNTAATTANN
 A G C T A G C T C A G T C T A G C T G A G T C A C G T A A G T C C G A T A G C T C A G T C A G T C T G A G T C A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T C G A T T C G A T C G A C G A T A G C T C T G A T C A G G C T A

LMX1B/MA0703.1/Jaspar

Match Rank:7
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:TTTGAAACTTTKAATT--
----------TTAATTAN
 A G C T A G C T C A G T C T A G C T G A G T C A C G T A A G T C C G A T A G C T C A G T C A G T C T G A G T C A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T G C T A G C T A C G A T G C A T C T G A T G C A

PRRX1/MA0716.1/Jaspar

Match Rank:8
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:TTTGAAACTTTKAATT--
----------NTAATTAN
 A G C T A G C T C A G T C T A G C T G A G T C A C G T A A G T C C G A T A G C T C A G T C A G T C T G A G T C A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T C T G A C T G A C A G T A G C T C T G A T C A G

ALX3/MA0634.1/Jaspar

Match Rank:9
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:TTTGAAACTTTKAATT---
---------NNTAATTAGA
 A G C T A G C T C A G T C T A G C T G A G T C A C G T A A G T C C G A T A G C T C A G T C A G T C T G A G T C A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T C T G A C G T A C A G T G A C T C T G A T C A G C T G A

UNCX/MA0721.1/Jaspar

Match Rank:10
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:TTTGAAACTTTKAATT--
----------NTAATTAN
 A G C T A G C T C A G T C T A G C T G A G T C A C G T A A G T C C G A T A G C T C A G T C A G T C T G A G T C A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T C T G A C T G A C A G T G A C T C T G A T C A G