Information for 6-CCADAAAARAATTTCC (Motif 5)

A G T C G T A C C G T A C T A G C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G A T A C G T A G C T G T A C G T A C
Reverse Opposite:
C A T G A C T G C T G A C G T A C G T A C G A T G C A T G A C T A C G T A C G T C G A T A G C T G A C T C G A T C A T G C T A G
p-value:1e-13
log p-value:-3.191e+01
Information Content per bp:1.714
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif32.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets56.3 +/- 24.3bp
Average Position of motif in Background45.6 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0116.1_Elf3_2/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCADAAAARAATTTCC
GTTCAAAAAAAAAATTC--
 A C G T A C G T A C G T A G T C G T A C C G T A C T A G C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G A T A C G T A G C T G T A C G T A C
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCADAAAARAATTTCC
ACGGCCATAAAATTAAT---
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A C T A G C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G A T A C G T A G C T G T A C G T A C
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCADAAAARAATTTCC
--AAACAAACATTC--
 A G T C G T A C C G T A C T A G C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G A T A C G T A G C T G T A C G T A C
A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T A C G T

PB0186.1_Tcf3_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCADAAAARAATTTCC
AGCCGAAAAAAAAAT---
 A C G T A C G T A G T C G T A C C G T A C T A G C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G A T A C G T A G C T G T A C G T A C
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCADAAAARAATTTCC
TACTGGAAAAAAAA----
 A C G T A C G T A G T C G T A C C G T A C T A G C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G A T A C G T A G C T G T A C G T A C
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCADAAAARAATTTCC
AATGCAATAAAATTTAT---
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A C T A G C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G A T A C G T A G C T G T A C G T A C
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCADAAAARAATTTCC
GTTAAAAAAAAAAATTA--
 A C G T A C G T A C G T A G T C G T A C C G T A C T A G C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G A T A C G T A G C T G T A C G T A C
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCADAAAARAATTTCC
AAGCCATAAAA--------
 A C G T A C G T A C G T A G T C G T A C C G T A C T A G C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G A T A C G T A G C T G T A C G T A C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCADAAAARAATTTCC
CCAATAAAAA-------
 A C G T A G T C G T A C C G T A C T A G C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G A T A C G T A G C T G T A C G T A C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCADAAAARAATTTCC
CTACCAATAAAATTCT----
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A C T A G C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G A T A C G T A G C T G T A C G T A C
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T A C G T