Information for 5-CGCGCCACAG (Motif 27)

A G T C A C T G A G T C A C T G A G T C A G T C C G T A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G C G A T A C T G A C T G A G T C C T A G A G T C C T A G
p-value:1e-8
log p-value:-1.891e+01
Information Content per bp:1.906
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.0 +/- 22.7bp
Average Position of motif in Background62.3 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CGCGCCACAG
AGCGCGCC----
 A C G T A C G T A G T C A C T G A G T C A C T G A G T C A G T C C G T A A G T C C G T A A C T G
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CGCGCCACAG---
--AGCCTCAGGCA
 A G T C A C T G A G T C A C T G A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGCGCCACAG---
--CGCCTCAGGCA
 A G T C A C T G A G T C A C T G A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CGCGCCACAG-
-----CACAGN
 A G T C A C T G A G T C A C T G A G T C A G T C C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CGCGCCACAG---
--AGCCTCAGGCA
 A G T C A C T G A G T C A C T G A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A

E2F1/MA0024.3/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CGCGCCACAG
TTTGGCGCCAAA-
 A C G T A C G T A C G T A G T C A C T G A G T C A C T G A G T C A G T C C G T A A G T C C G T A A C T G
G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGCGCCACAG-----
NTNGCCTCAGGCNNN
 A G T C A C T G A G T C A C T G A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T

PB0095.1_Zfp161_1/Jaspar

Match Rank:8
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------CGCGCCACAG
NCANGCGCGCGCGCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C T G A G T C A G T C C G T A A G T C C G T A A C T G
G C A T G A T C C T G A C T A G C T A G G A T C T C A G G A T C C T A G A G T C C T A G A G T C T A C G G A T C G A T C G T C A A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CGCGCCACAG-----
---GCCTCAGGGCAT
 A G T C A C T G A G T C A C T G A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

PB0009.1_E2F3_1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CGCGCCACAG-
ANCGCGCGCCCTTNN
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C T G A G T C A G T C C G T A A G T C C G T A A C T G A C G T
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T