Information for 2-CAGAGCARTATTTCTC (Motif 2)

G T A C G T C A T A C G C G T A A C T G G T A C C G T A T C G A C G A T C T G A G C A T C G A T A C G T A G T C A G C T A T G C
Reverse Opposite:
A T C G C T G A T C A G G T C A C G T A C G T A A G C T G C T A A G C T C G A T A C T G G T A C C G A T A T G C A C G T A C T G
p-value:1e-15
log p-value:-3.638e+01
Information Content per bp:1.660
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.37%
Number of Background Sequences with motif39.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets41.2 +/- 22.5bp
Average Position of motif in Background46.4 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX4/MA0867.1/Jaspar

Match Rank:1
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGCARTATTTCTC
AACACTGCAATTGTTC--
 A C G T A C G T G T A C G T C A T A C G C G T A A C T G G T A C C G T A T C G A C G A T C T G A G C A T C G A T A C G T A G T C A G C T A T G C
C G T A C T G A A G T C G T C A G T A C A G C T A C T G G T A C G T C A G T C A G A C T A G C T A C T G A G C T A C G T G A T C A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:2
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CAGAGCARTATTTCTC
TTAAGAACAATAAATT--
 A C G T A C G T G T A C G T C A T A C G C G T A A C T G G T A C C G T A T C G A C G A T C T G A G C A T C G A T A C G T A G T C A G C T A T G C
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CAGAGCARTATTTCTC
GAGCACAGCAGGACA----
 A C G T A C G T A C G T G T A C G T C A T A C G C G T A A C T G G T A C C G T A T C G A C G A T C T G A G C A T C G A T A C G T A G T C A G C T A T G C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CAGAGCARTATTTCTC
CCTTGCAATTTTTNN-
 G T A C G T C A T A C G C G T A A C T G G T A C C G T A T C G A C G A T C T G A G C A T C G A T A C G T A G T C A G C T A T G C
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CAGAGCARTATTTCTC
CCACACAGCAGGAGA----
 A C G T A C G T A C G T G T A C G T C A T A C G C G T A A C T G G T A C C G T A T C G A C G A T C T G A G C A T C G A T A C G T A G T C A G C T A T G C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:6
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGCARTATTTCTC
TNNAGAACAATANATNN-
 A C G T A C G T G T A C G T C A T A C G C G T A A C T G G T A C C G T A T C G A C G A T C T G A G C A T C G A T A C G T A G T C A G C T A T G C
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C A C G T

Sox11/MA0869.1/Jaspar

Match Rank:7
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGCARTATTTCTC
AACACTGAAATTGTT---
 A C G T A C G T G T A C G T C A T A C G C G T A A C T G G T A C C G T A T C G A C G A T C T G A G C A T C G A T A C G T A G T C A G C T A T G C
T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:8
Score:0.49
Offset:6
Orientation:forward strand
Alignment:CAGAGCARTATTTCTC
------AATAATT---
 G T A C G T C A T A C G C G T A A C T G G T A C C G T A T C G A C G A T C T G A G C A T C G A T A C G T A G T C A G C T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CAGAGCARTATTTCTC
AATCGCACTGCATTCCG----
 A C G T A C G T A C G T A C G T A C G T G T A C G T C A T A C G C G T A A C T G G T A C C G T A T C G A C G A T C T G A G C A T C G A T A C G T A G T C A G C T A T G C
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.48
Offset:0
Orientation:forward strand
Alignment:CAGAGCARTATTTCTC
CACAGCAGGGGG----
 G T A C G T C A T A C G C G T A A C T G G T A C C G T A T C G A C G A T C T G A G C A T C G A T A C G T A G T C A G C T A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T