Information for 8-CAAARRTAWTART (Motif 18)

A G T C C G T A C G T A C G T A C T G A C T G A A C G T C G T A C G T A A C G T G T C A C T G A A C G T
Reverse Opposite:
C G T A A G C T A C G T C G T A C G A T A C G T C G T A A G C T A G C T A C G T A C G T A C G T A C T G
p-value:1e-10
log p-value:-2.485e+01
Information Content per bp:1.879
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.5 +/- 21.9bp
Average Position of motif in Background61.2 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CAAARRTAWTART---
-----ATATTAATTAA
 A G T C C G T A C G T A C G T A C T G A C T G A A C G T C G T A C G T A A C G T G T C A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

MEF2C/MA0497.1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CAAARRTAWTART
ATGCTAAAAATAGAA--
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C T G A C T G A A C G T C G T A C G T A A C G T G T C A C T G A A C G T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T

PH0172.1_Tlx2/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CAAARRTAWTART------
--AANTTATTAATTAATTA
 A G T C C G T A C G T A C G T A C T G A C T G A A C G T C G T A C G T A A C G T G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G T A C T A G G A C T G C A T C G T A C G A T G A C T C G T A C G T A G C A T C G A T C T G A G C T A G A C T C G A T T G C A

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.58
Offset:7
Orientation:forward strand
Alignment:CAAARRTAWTART-
-------AATAATT
 A G T C C G T A C G T A C G T A C T G A C T G A A C G T C G T A C G T A A C G T G T C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAAARRTAWTART
DCYAAAAATAGM---
 A C G T A C G T A G T C C G T A C G T A C G T A C T G A C T G A A C G T C G T A C G T A A C G T G T C A C T G A A C G T
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAAARRTAWTART------
---AGTTATTAATGAGGTC
 A G T C C G T A C G T A C G T A C T G A C T G A A C G T C G T A C G T A A C G T G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

PB0064.1_Sox14_1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAAARRTAWTART-
GCTAATTATAATTATC
 A C G T A C G T A G T C C G T A C G T A C G T A C T G A C T G A A C G T C G T A C G T A A C G T G T C A C T G A A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0069.1_Sox21_1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CAAARRTAWTART----
-NNTAATTATAATNANN
 A G T C C G T A C G T A C G T A C T G A C T G A A C G T C G T A C G T A A C G T G T C A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAAARRTAWTART-
AAAAACCATTAAGG
 A G T C C G T A C G T A C G T A C T G A C T G A A C G T C G T A C G T A A C G T G T C A C T G A A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Hoxd8/MA0910.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CAAARRTAWTART------
--NAGCCATTAATTANTTA
 A G T C C G T A C G T A C G T A C T G A C T G A A C G T C G T A C G T A A C G T G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A