Information for 6-CTGCCAACTT (Motif 9)

A T G C G C A T A C T G G A T C G T A C G T C A T C G A G A T C G A C T G C A T
Reverse Opposite:
C G T A C T G A C T A G A G C T C A G T C A T G C T A G T G A C C G T A T A C G
p-value:1e-15
log p-value:-3.561e+01
Information Content per bp:1.514
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif7.31%
Number of Background Sequences with motif932.2
Percentage of Background Sequences with motif1.97%
Average Position of motif in Targets48.9 +/- 27.8bp
Average Position of motif in Background49.5 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAACTT
GGTGCCAAGT-
 A C G T A T G C G C A T A C T G G A T C G T A C G T C A T C G A G A T C G A C T G C A T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CTGCCAACTT
ATGCCAACC-
 A T G C G C A T A C T G G A T C G T A C G T C A T C G A G A T C G A C T G C A T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CTGCCAACTT
TTGCCAAG--
 A T G C G C A T A C T G G A T C G T A C G T C A T C G A G A T C G A C T G C A T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAACTT
CGTGCCAAG--
 A C G T A T G C G C A T A C T G G A T C G T A C G T C A T C G A G A T C G A C T G C A T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:CTGCCAACTT
-TGCCAA---
 A T G C G C A T A C T G G A T C G T A C G T C A T C G A G A T C G A C T G C A T
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---CTGCCAACTT---
ACTATGCCAACCTACC
 A C G T A C G T A C G T A T G C G C A T A C T G G A T C G T A C G T C A T C G A G A T C G A C T G C A T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CTGCCAACTT
-TGTCANYT-
 A T G C G C A T A C T G G A T C G T A C G T C A T C G A G A T C G A C T G C A T
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CTGCCAACTT
ATGCCCACC-
 A T G C G C A T A C T G G A T C G T A C G T C A T C G A G A T C G A C T G C A T
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CTGCCAACTT
VGCTGWCAVB--
 A C G T A C G T A T G C G C A T A C T G G A T C G T A C G T C A T C G A G A T C G A C T G C A T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAACTT
GCTGTCAA---
 A C G T A T G C G C A T A C T G G A T C G T A C G T C A T C G A G A T C G A C T G C A T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T