Information for 5-DDAAGTACTT (Motif 5)

C A T G C A G T C G T A C T G A A T C G A G C T C T G A G T A C C G A T A G C T
Reverse Opposite:
C T G A C G T A A C T G A G C T T C G A A T G C G A C T A C G T G T C A G T A C
p-value:1e-18
log p-value:-4.217e+01
Information Content per bp:1.705
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif7.18%
Number of Background Sequences with motif770.0
Percentage of Background Sequences with motif1.63%
Average Position of motif in Targets55.4 +/- 24.2bp
Average Position of motif in Background49.8 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---DDAAGTACTT----
NATTTAAGTACTTANNA
 A C G T A C G T A C G T C A T G C A G T C G T A C T G A A T C G A G C T C T G A G T A C C G A T A G C T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--DDAAGTACTT----
CTTTAAGTACTTAATG
 A C G T A C G T C A T G C A G T C G T A C T G A A T C G A G C T C T G A G T A C C G A T A G C T A C G T A C G T A C G T A C G T
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--DDAAGTACTT-----
TTTTAAGTACTTAAATT
 A C G T A C G T C A T G C A G T C G T A C T G A A T C G A G C T C T G A G T A C C G A T A G C T A C G T A C G T A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:4
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---DDAAGTACTT----
ACTCCAAGTACTTGGAA
 A C G T A C G T A C G T C A T G C A G T C G T A C T G A A T C G A G C T C T G A G T A C C G A T A G C T A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.76
Offset:2
Orientation:forward strand
Alignment:DDAAGTACTT--
--AAGCACTTAA
 C A T G C A G T C G T A C T G A A T C G A G C T C T G A G T A C C G A T A G C T A C G T A C G T
A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----DDAAGTACTT---
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A C G T C A T G C A G T C G T A C T G A A T C G A G C T C T G A G T A C C G A T A G C T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

ISL2/MA0914.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:DDAAGTACTT
TTAAGTGC--
 C A T G C A G T C G T A C T G A A T C G A G C T C T G A G T A C C G A T A G C T
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:DDAAGTACTT
TTAAGTGGN-
 C A T G C A G T C G T A C T G A A T C G A G C T C T G A G T A C C G A T A G C T
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:DDAAGTACTT--
--MRSCACTYAA
 C A T G C A G T C G T A C T G A A T C G A G C T C T G A G T A C C G A T A G C T A C G T A C G T
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:DDAAGTACTT
TTAAGTGGT-
 C A T G C A G T C G T A C T G A A T C G A G C T C T G A G T A C C G A T A G C T
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T