Information for 25-TTRTGKGTTTTAYTGC (Motif 44)

C G A T A G C T C T G A A C G T A C T G A C T G A C T G A G C T A C G T A C G T C G A T C G T A A G T C A C G T C T A G A G T C
Reverse Opposite:
A C T G A G T C C G T A T C A G C G A T C G T A C G T A C G T A C T G A G T A C T G A C A G T C C G T A G A C T C T G A C G T A
p-value:1e-7
log p-value:-1.794e+01
Information Content per bp:1.754
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif17.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets44.9 +/- 26.6bp
Average Position of motif in Background49.6 +/- 16.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TTRTGKGTTTTAYTGC---
---TNAATTTTATTACCTN
 C G A T A G C T C T G A A C G T A C T G A C T G A C T G A G C T A C G T A C G T C G A T C G T A A G T C A C G T C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

Hoxd9/MA0913.1/Jaspar

Match Rank:2
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:TTRTGKGTTTTAYTGC
------TTTTTATTGC
 C G A T A G C T C T G A A C G T A C T G A C T G A C T G A G C T A C G T A C G T C G A T C G T A A G T C A C G T C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:TTRTGKGTTTTAYTGC-
------NTTTTATTACN
 C G A T A G C T C T G A A C G T A C T G A C T G A C T G A G C T A C G T A C G T C G A T C G T A A G T C A C G T C T A G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:TTRTGKGTTTTAYTGC-
-------TTTAATTGCN
 C G A T A G C T C T G A A C G T A C T G A C T G A C T G A G C T A C G T A C G T C G A T C G T A A G T C A C G T C T A G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TTRTGKGTTTTAYTGC---
---NGANTTTTATGGCTCN
 C G A T A G C T C T G A A C G T A C T G A C T G A C T G A G C T A C G T A C G T C G A T C G T A A G T C A C G T C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:TTRTGKGTTTTAYTGC
------NTTTTATGAC
 C G A T A G C T C T G A A C G T A C T G A C T G A C T G A G C T A C G T A C G T C G A T C G T A A G T C A C G T C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:TTRTGKGTTTTAYTGC
-------TTTTATTGC
 C G A T A G C T C T G A A C G T A C T G A C T G A C T G A G C T A C G T A C G T C G A T C G T A A G T C A C G T C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:TTRTGKGTTTTAYTGC--
-------TTTTATGGCTN
 C G A T A G C T C T G A A C G T A C T G A C T G A C T G A G C T A C G T A C G T C G A T C G T A A G T C A C G T C T A G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTRTGKGTTTTAYTGC---
--NTNAATTTTATTGNATT
 C G A T A G C T C T G A A C G T A C T G A C T G A C T G A G C T A C G T A C G T C G A T C G T A A G T C A C G T C T A G A G T C A C G T A C G T A C G T
A C G T A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TTRTGKGTTTTAYTGC----
----NAATTTTATTACCNNN
 C G A T A G C T C T G A A C G T A C T G A C T G A C T G A G C T A C G T A C G T C G A T C G T A A G T C A C G T C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T