p-value: | 1e-6 |
log p-value: | -1.452e+01 |
Information Content per bp: | 1.559 |
Number of Target Sequences with motif | 40.0 |
Percentage of Target Sequences with motif | 12.20% |
Number of Background Sequences with motif | 1186.3 |
Percentage of Background Sequences with motif | 5.14% |
Average Position of motif in Targets | 42.1 +/- 25.4bp |
Average Position of motif in Background | 50.8 +/- 29.0bp |
Strand Bias (log2 ratio + to - strand density) | 1.1 |
Multiplicity (# of sites on avg that occur together) | 1.07 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer
Match Rank: | 1 |
Score: | 0.61 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TGACCTGACTAGT TGACCTYA----- |
|
|
|
NR4A2/MA0160.1/Jaspar
Match Rank: | 2 |
Score: | 0.57 |
Offset: | -1 |
Orientation: | reverse strand |
Alignment: | -TGACCTGACTAGT GTGACCTT------ |
|
|
|
MF0004.1_Nuclear_Receptor_class/Jaspar
Match Rank: | 3 |
Score: | 0.57 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TGACCTGACTAGT TGACCT------- |
|
|
|
RORA/MA0071.1/Jaspar
Match Rank: | 4 |
Score: | 0.56 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TGACCTGACTAGT TGACCTTGAT--- |
|
|
|
PH0058.1_Hoxb3/Jaspar
Match Rank: | 5 |
Score: | 0.56 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | TGACCTGACTAGT---- TGAGCTAATTAGTTGGA |
|
|
|
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
Match Rank: | 6 |
Score: | 0.56 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TGACCTGACTAGT TGACCTARTT--- |
|
|
|
SREBF2/MA0596.1/Jaspar
Match Rank: | 7 |
Score: | 0.55 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -TGACCTGACTAGT ATGGGGTGAT---- |
|
|
|
RORA(var.2)/MA0072.1/Jaspar
Match Rank: | 8 |
Score: | 0.54 |
Offset: | -1 |
Orientation: | reverse strand |
Alignment: | -TGACCTGACTAGT TTGACCTANTTATN |
|
|
|
PH0031.1_Evx1/Jaspar
Match Rank: | 9 |
Score: | 0.54 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | TGACCTGACTAGT---- AGAACTAATTAGTGGAC |
|
|
|
PB0041.1_Mafb_1/Jaspar
Match Rank: | 10 |
Score: | 0.53 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---TGACCTGACTAGT- AAATTTGCTGACTTAGA |
|
|
|