Information for 5-ACWTAWATGATGAVTA (Motif 17)

G T C A A G T C G C T A A C G T C G T A G C A T C G T A A C G T C A T G C G T A C G A T T C A G C G T A T C G A A C G T G T C A
Reverse Opposite:
A C G T G T C A A G C T C G A T A G T C C G T A C G A T G A T C G T C A C G A T C G T A C G A T C G T A C G A T T C A G A C G T
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.686
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.44%
Number of Background Sequences with motif23.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets35.1 +/- 28.3bp
Average Position of motif in Background43.8 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ACWTAWATGATGAVTA
NNCTNAATTATGANN-
 G T C A A G T C G C T A A C G T C G T A G C A T C G T A A C G T C A T G C G T A C G A T T C A G C G T A T C G A A C G T G T C A
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.53
Offset:9
Orientation:forward strand
Alignment:ACWTAWATGATGAVTA---
---------ATGAATATTC
 G T C A A G T C G C T A A C G T C G T A G C A T C G T A A C G T C A T G C G T A C G A T T C A G C G T A T C G A A C G T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

POU4F1/MA0790.1/Jaspar

Match Rank:3
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:ACWTAWATGATGAVTA
-CATTAATTATTCAT-
 G T C A A G T C G C T A A C G T C G T A G C A T C G T A A C G T C A T G C G T A C G A T T C A G C G T A T C G A A C G T G T C A
A C G T G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:4
Score:0.52
Offset:1
Orientation:forward strand
Alignment:ACWTAWATGATGAVTA
-GCTAAACGGT-----
 G T C A A G T C G C T A A C G T C G T A G C A T C G T A A C G T C A T G C G T A C G A T T C A G C G T A T C G A A C G T G T C A
A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T A C G T A C G T A C G T A C G T A C G T

PB0108.1_Atf1_2/Jaspar

Match Rank:5
Score:0.51
Offset:4
Orientation:forward strand
Alignment:ACWTAWATGATGAVTA--
----GAATGACGAATAAC
 G T C A A G T C G C T A A C G T C G T A G C A T C G T A A C G T C A T G C G T A C G A T T C A G C G T A T C G A A C G T G T C A A C G T A C G T
A C G T A C G T A C G T A C G T T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

PB0080.1_Tbp_1/Jaspar

Match Rank:6
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---ACWTAWATGATGAVTA
NANTTATATATAANGN---
 A C G T A C G T A C G T G T C A A G T C G C T A A C G T C G T A G C A T C G T A A C G T C A T G C G T A C G A T T C A G C G T A T C G A A C G T G T C A
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A A C G T A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-ACWTAWATGATGAVTA
TAATTCAATGAAGTG--
 A C G T G T C A A G T C G C T A A C G T C G T A G C A T C G T A A C G T C A T G C G T A C G A T T C A G C G T A T C G A A C G T G T C A
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:ACWTAWATGATGAVTA-
-CTACTAGGATGTNNTN
 G T C A A G T C G C T A A C G T C G T A G C A T C G T A A C G T C A T G C G T A C G A T T C A G C G T A T C G A A C G T G T C A A C G T
A C G T A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

POU4F3/MA0791.1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-ACWTAWATGATGAVTA
CTCATTAATTATGCAT-
 A C G T G T C A A G T C G C T A A C G T C G T A G C A T C G T A A C G T C A T G C G T A C G A T T C A G C G T A T C G A A C G T G T C A
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.50
Offset:9
Orientation:forward strand
Alignment:ACWTAWATGATGAVTA---
---------ATGMATATDC
 G T C A A G T C G C T A A C G T C G T A G C A T C G T A A C G T C A T G C G T A C G A T T C A G C G T A T C G A A C G T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C