Information for 7-GCTGRATGCCAAGAAA (Motif 9)

A C T G G T A C A G C T T C A G C T G A G T C A A C G T A C T G T G A C A G T C G T C A C T G A A C T G T C G A G T C A G T C A
Reverse Opposite:
A C G T A C G T A G C T G T A C G A C T A C G T C T A G A C T G A G T C G T C A A C G T A G C T A G T C C T G A A C T G G T A C
p-value:1e-11
log p-value:-2.681e+01
Information Content per bp:1.753
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets49.8 +/- 24.2bp
Average Position of motif in Background58.6 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GCTGRATGCCAAGAAA
----GGTGCCAAGT--
 A C T G G T A C A G C T T C A G C T G A G T C A A C G T A C T G T G A C A G T C G T C A C T G A A C T G T C G A G T C A G T C A
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCTGRATGCCAAGAAA
----CGTGCCAAG---
 A C T G G T A C A G C T T C A G C T G A G T C A A C G T A C T G T G A C A G T C G T C A C T G A A C T G T C G A G T C A G T C A
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GCTGRATGCCAAGAAA
-----TTGCCAAG---
 A C T G G T A C A G C T T C A G C T G A G T C A A C G T A C T G T G A C A G T C G T C A C T G A A C T G T C G A G T C A G T C A
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GCTGRATGCCAAGAAA
------TGCCAA----
 A C T G G T A C A G C T T C A G C T G A G T C A A C G T A C T G T G A C A G T C G T C A C T G A A C T G T C G A G T C A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCTGRATGCCAAGAAA
TTGGCANNNTGCCAAG---
 A C G T A C G T A C G T A C T G G T A C A G C T T C A G C T G A G T C A A C G T A C T G T G A C A G T C G T C A C T G A A C T G T C G A G T C A G T C A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCTGRATGCCAAGAAA
TGGCACCATGCCAA----
 A C G T A C G T A C T G G T A C A G C T T C A G C T G A G T C A A C G T A C T G T G A C A G T C G T C A C T G A A C T G T C G A G T C A G T C A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCTGRATGCCAAGAAA
----RHTGWCAR----
 A C T G G T A C A G C T T C A G C T G A G T C A A C G T A C T G T G A C A G T C G T C A C T G A A C T G T C G A G T C A G T C A
A C G T A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCTGRATGCCAAGAAA
TGGCAGNCTGCCAG----
 A C G T A C G T A C T G G T A C A G C T T C A G C T G A G T C A A C G T A C T G T G A C A G T C G T C A C T G A A C T G T C G A G T C A G T C A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCTGRATGCCAAGAAA
CCGCCCAAGGGCAG----
 A C G T A C G T A C T G G T A C A G C T T C A G C T G A G T C A A C G T A C T G T G A C A G T C G T C A C T G A A C T G T C G A G T C A G T C A
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCTGRATGCCAAGAAA
---ARNTGACA-----
 A C T G G T A C A G C T T C A G C T G A G T C A A C G T A C T G T G A C A G T C G T C A C T G A A C T G T C G A G T C A G T C A
A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T