Information for 5-GATCAGAAMAGGAGAG (Motif 7)

A C T G G T C A A C G T A G T C C G T A A T C G C G T A C T G A T G C A C T G A C A T G A T C G C G T A A C T G C G T A C A T G
Reverse Opposite:
G A T C A C G T A G T C A C G T A T G C G A T C A G C T A C G T A G C T C G A T A T G C A C G T C T A G G T C A C A G T A G T C
p-value:1e-12
log p-value:-2.828e+01
Information Content per bp:1.777
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.4 +/- 22.3bp
Average Position of motif in Background28.8 +/- 8.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GATCAGAAMAGGAGAG
GAGCACAGCAGGACA-
 A C T G G T C A A C G T A G T C C G T A A T C G C G T A C T G A T G C A C T G A C A T G A T C G C G T A A C T G C G T A C A T G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GATCAGAAMAGGAGAG
CCACACAGCAGGAGA-
 A C T G G T C A A C G T A G T C C G T A A T C G C G T A C T G A T G C A C T G A C A T G A T C G C G T A A C T G C G T A C A T G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GATCAGAAMAGGAGAG
CCACACAGCAGGAGA-
 A C T G G T C A A C G T A G T C C G T A A T C G C G T A C T G A T G C A C T G A C A T G A T C G C G T A A C T G C G T A C A T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GATCAGAAMAGGAGAG
GGTCANYTGAGGWCA-
 A C T G G T C A A C G T A G T C C G T A A T C G C G T A C T G A T G C A C T G A C A T G A T C G C G T A A C T G C G T A C A T G
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GATCAGAAMAGGAGAG
---CACAGCAGGGGG-
 A C T G G T C A A C G T A G T C C G T A A T C G C G T A C T G A T G C A C T G A C A T G A T C G C G T A A C T G C G T A C A T G
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:6
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GATCAGAAMAGGAGAG---
----AGAAAGTGAAAGTGA
 A C T G G T C A A C G T A G T C C G T A A T C G C G T A C T G A T G C A C T G A C A T G A T C G C G T A A C T G C G T A C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

PB0120.1_Foxj1_2/Jaspar

Match Rank:7
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GATCAGAAMAGGAGAG
ATGTCACAACAACAC--
 A C G T A C T G G T C A A C G T A G T C C G T A A T C G C G T A C T G A T G C A C T G A C A T G A T C G C G T A A C T G C G T A C A T G
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C A C G T A C G T

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.49
Offset:4
Orientation:forward strand
Alignment:GATCAGAAMAGGAGAG---
----AGATGKDGAGATAAG
 A C T G G T C A A C G T A G T C C G T A A T C G C G T A C T G A T G C A C T G A C A T G A T C G C G T A A C T G C G T A C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:9
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--GATCAGAAMAGGAGAG
AAGGTCACGAAAGGTCA-
 A C G T A C G T A C T G G T C A A C G T A G T C C G T A A T C G C G T A C T G A T G C A C T G A C A T G A T C G C G T A A C T G C G T A C A T G
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A A C G T

PB0021.1_Gata3_1/Jaspar

Match Rank:10
Score:0.48
Offset:-8
Orientation:forward strand
Alignment:--------GATCAGAAMAGGAGAG
TTTTTAGAGATAAGAAATAAAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A A C G T A G T C C G T A A T C G C G T A C T G A T G C A C T G A C A T G A T C G C G T A A C T G C G T A C A T G
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G A C G T A C G T