Information for 2-AAGKCCTGCCAARMMA (Motif 3)

T G C A G C T A C T A G C A G T G A T C G T A C C G A T A C T G A T G C G T A C G T C A T C G A C T G A T G C A T G A C C G T A
Reverse Opposite:
G C A T A C T G A C G T G A C T A G C T A C G T A C T G T A C G G T A C C G T A C A T G C A T G G T A C G A T C C G A T A C G T
p-value:1e-17
log p-value:-4.127e+01
Information Content per bp:1.569
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif8.39%
Number of Background Sequences with motif929.1
Percentage of Background Sequences with motif1.95%
Average Position of motif in Targets51.0 +/- 23.1bp
Average Position of motif in Background49.5 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.72
Offset:5
Orientation:forward strand
Alignment:AAGKCCTGCCAARMMA
-----TTGCCAAG---
 T G C A G C T A C T A G C A G T G A T C G T A C C G A T A C T G A T G C G T A C G T C A T C G A C T G A T G C A T G A C C G T A
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.71
Offset:4
Orientation:forward strand
Alignment:AAGKCCTGCCAARMMA
----CGTGCCAAG---
 T G C A G C T A C T A G C A G T G A T C G T A C C G A T A C T G A T G C G T A C G T C A T C G A C T G A T G C A T G A C C G T A
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:AAGKCCTGCCAARMMA
------TGCCAA----
 T G C A G C T A C T A G C A G T G A T C G T A C C G A T A C T G A T G C G T A C G T C A T C G A C T G A T G C A T G A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.68
Offset:4
Orientation:forward strand
Alignment:AAGKCCTGCCAARMMA
----GGTGCCAAGT--
 T G C A G C T A C T A G C A G T G A T C G T A C C G A T A C T G A T G C G T A C G T C A T C G A C T G A T G C A T G A C C G T A
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:AAGKCCTGCCAARMMA
----GCTGTCAA----
 T G C A G C T A C T A G C A G T G A T C G T A C C G A T A C T G A T G C G T A C G T C A T C G A C T G A T G C A T G A C C G T A
A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAGKCCTGCCAARMMA
AATTACCTGTCAATAC-
 A C G T T G C A G C T A C T A G C A G T G A T C G T A C C G A T A C T G A T G C G T A C G T C A T C G A C T G A T G C A T G A C C G T A
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAGKCCTGCCAARMMA
AAAGACCTGTCAATCC-
 A C G T T G C A G C T A C T A G C A G T G A T C G T A C C G A T A C T G A T G C G T A C G T C A T C G A C T G A T G C A T G A C C G T A
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T

E2F8/MA0865.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAGKCCTGCCAARMMA
-TTTCCCGCCAAA---
 T G C A G C T A C T A G C A G T G A T C G T A C C G A T A C T G A T G C G T A C G T C A T C G A C T G A T G C A T G A C C G T A
A C G T G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A A C G T A C G T A C G T

E2F7/MA0758.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGKCCTGCCAARMMA
TTTTCCCGCCAAAA--
 T G C A G C T A C T A G C A G T G A T C G T A C C G A T A C T G A T G C G T A C G T C A T C G A C T G A T G C A T G A C C G T A
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AAGKCCTGCCAARMMA
----CCTGTCAA----
 T G C A G C T A C T A G C A G T G A T C G T A C C G A T A C T G A T G C G T A C G T C A T C G A C T G A T G C A T G A C C G T A
A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T