Information for 15-RGACAGGTGGCAGGCC (Motif 20)

C T G A C T A G G T C A G A T C C G T A A T C G C T A G C G A T A C T G A C T G G T A C C G T A A T C G A T C G G T A C A G T C
Reverse Opposite:
T C A G A C T G T A G C A T G C A C G T A C T G G T A C A G T C C G T A A G T C A T G C C G A T C A T G A C G T A G T C A G C T
p-value:1e-8
log p-value:-2.003e+01
Information Content per bp:1.760
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.7 +/- 23.4bp
Average Position of motif in Background23.6 +/- 14.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:RGACAGGTGGCAGGCC
TGACAGGTGTCA----
 C T G A C T A G G T C A G A T C C G T A A T C G C T A G C G A T A C T G A C T G G T A C C G T A A T C G A T C G G T A C A G T C
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.72
Offset:4
Orientation:forward strand
Alignment:RGACAGGTGGCAGGCC
----AGGTGTCA----
 C T G A C T A G G T C A G A T C C G T A A T C G C T A G C G A T A C T G A C T G G T A C C G T A A T C G A T C G G T A C A G T C
A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:RGACAGGTGGCAGGCC
TGACAGGTGTCA----
 C T G A C T A G G T C A G A T C C G T A A T C G C T A G C G A T A C T G A C T G G T A C C G T A A T C G A T C G G T A C A G T C
G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A A C G T A C G T A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:RGACAGGTGGCAGGCC
TGACAGCTGTCA----
 C T G A C T A G G T C A G A T C C G T A A T C G C T A G C G A T A C T G A C T G G T A C C G T A A T C G A T C G G T A C A G T C
G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:RGACAGGTGGCAGGCC
-AACAGATGGC-----
 C T G A C T A G G T C A G A T C C G T A A T C G C T A G C G A T A C T G A C T G G T A C C G T A A T C G A T C G G T A C A G T C
A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T

PB0047.1_Myf6_1/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---RGACAGGTGGCAGGCC
GAAGAACAGGTGTCCG---
 A C G T A C G T A C G T C T G A C T A G G T C A G A T C C G T A A T C G C T A G C G A T A C T G A C T G G T A C C G T A A T C G A T C G G T A C A G T C
T C A G T C G A C T G A A T C G T C G A C T G A A G T C C G T A A T C G A C T G G A C T A C T G A C G T A G T C G A T C A C T G A C G T A C G T A C G T

TGIF1/MA0796.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:RGACAGGTGGCAGGCC
TGACAGCTGTCA----
 C T G A C T A G G T C A G A T C C G T A A T C G C T A G C G A T A C T G A C T G G T A C C G T A A T C G A T C G G T A C A G T C
G C A T T C A G T C G A A G T C T C G A A C T G T A G C A G C T T A C G G C A T G T A C C G T A A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:RGACAGGTGGCAGGCC-
----AGGTGNCAGACAG
 C T G A C T A G G T C A G A T C C G T A A T C G C T A G C G A T A C T G A C T G G T A C C G T A A T C G A T C G G T A C A G T C A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.66
Offset:4
Orientation:forward strand
Alignment:RGACAGGTGGCAGGCC
----AGGTGHCAGACA
 C T G A C T A G G T C A G A T C C G T A A T C G C T A G C G A T A C T G A C T G G T A C C G T A A T C G A T C G G T A C A G T C
A C G T A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:RGACAGGTGGCAGGCC
----ARNTGACA----
 C T G A C T A G G T C A G A T C C G T A A T C G C T A G C G A T A C T G A C T G G T A C C G T A A T C G A T C G G T A C A G T C
A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T