Information for 9-GTTAGTTTTGGAA (Motif 13)

A C T G A G C T C A G T C G T A C T A G A C G T A C G T G A C T A C G T C A T G A C T G G T C A C G T A
Reverse Opposite:
G A C T A C G T T G A C G T A C G T C A C T G A G T C A C G T A G A T C G C A T G T C A T C G A T A G C
p-value:1e-10
log p-value:-2.340e+01
Information Content per bp:1.687
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.3 +/- 28.4bp
Average Position of motif in Background53.3 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GTTAGTTTTGGAA
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T A C T G A G C T C A G T C G T A C T A G A C G T A C G T G A C T A C G T C A T G A C T G G T C A C G T A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

MEF2C/MA0497.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTTAGTTTTGGAA-
TTCTATTTTTAGNNN
 A C G T A C T G A G C T C A G T C G T A C T A G A C G T A C G T G A C T A C G T C A T G A C T G G T C A C G T A A C G T
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTTAGTTTTGGAA
KCTATTTTTRGH-
 A C T G A G C T C A G T C G T A C T A G A C G T A C G T G A C T A C G T C A T G A C T G G T C A C G T A
C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTTAGTTTTGGAA
GCTATTTTTGGM-
 A C T G A G C T C A G T C G T A C T A G A C G T A C G T G A C T A C G T C A T G A C T G G T C A C G T A
C A T G A G T C G A C T C G T A C G A T G C A T G A C T G C A T C G A T C T A G C A T G T G A C A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTTAGTTTTGGAA
GCTATTTTTAGC-
 A C T G A G C T C A G T C G T A C T A G A C G T A C G T G A C T A C G T C A T G A C T G G T C A C G T A
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTAGTTTTGGAA---
-ANATTTTTGCAANTN
 A C T G A G C T C A G T C G T A C T A G A C G T A C G T G A C T A C G T C A T G A C T G G T C A C G T A A C G T A C G T A C G T
A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GTTAGTTTTGGAA-
----RTTATGYAAB
 A C T G A G C T C A G T C G T A C T A G A C G T A C G T G A C T A C G T C A T G A C T G G T C A C G T A A C G T
A C G T A C G T A C G T A C G T T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GTTAGTTTTGGAA--
-----NNTTGGCANN
 A C T G A G C T C A G T C G T A C T A G A C G T A C G T G A C T A C G T C A T G A C T G G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

PB0116.1_Elf3_2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GTTAGTTTTGGAA-
GNATTTTTTTTTTGANC
 A C G T A C G T A C G T A C T G A G C T C A G T C G T A C T A G A C G T A C G T G A C T A C G T C A T G A C T G G T C A C G T A A C G T
C T A G G C T A C T G A A C G T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C A G T C A T G T G C A T C G A G T A C

MEF2A/MA0052.3/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTTAGTTTTGGAA
TCTATTTTTAGA-
 A C T G A G C T C A G T C G T A C T A G A C G T A C G T G A C T A C G T C A T G A C T G G T C A C G T A
C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A A C G T