Information for 1-VAAACCDGTTTDDCHR (Motif 1)

T A G C T C G A C G T A C T G A A T G C G A T C C T A G A C T G G A C T G A C T G C A T C A T G C G T A A G T C G T A C C T G A
Reverse Opposite:
G A C T C A T G T C A G G C A T G T A C C G T A C T G A C T G A A G T C G A T C C T A G A T C G G A C T G C A T A G C T A T C G
p-value:1e-142
log p-value:-3.274e+02
Information Content per bp:1.516
Number of Target Sequences with motif231.0
Percentage of Target Sequences with motif35.87%
Number of Background Sequences with motif2051.6
Percentage of Background Sequences with motif4.31%
Average Position of motif in Targets51.8 +/- 18.8bp
Average Position of motif in Background49.0 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRHL1/MA0647.1/Jaspar

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:VAAACCDGTTTDDCHR
AAAACCGGTTTT----
 T A G C T C G A C G T A C T G A A T G C G A T C C T A G A C T G G A C T G A C T G C A T C A T G C G T A A G T C G T A C C T G A
G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T A C G T A C G T A C G T A C G T

TFCP2/MA0145.3/Jaspar

Match Rank:2
Score:0.85
Offset:1
Orientation:forward strand
Alignment:VAAACCDGTTTDDCHR
-AAACCGGTTT-----
 T A G C T C G A C G T A C T G A A T G C G A T C C T A G A C T G G A C T G A C T G C A T C A T G C G T A A G T C G T A C C T G A
A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T A C G T A C G T A C G T A C G T A C G T

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:3
Score:0.85
Offset:1
Orientation:forward strand
Alignment:VAAACCDGTTTDDCHR-----
-AAACYKGTTWDACMRGTTTB
 T A G C T C G A C G T A C T G A A T G C G A T C C T A G A C T G G A C T G A C T G C A T C A T G C G T A A G T C G T A C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C T G A C T G A A T G C G A T C C A T G A C T G G A C T G A C T G C A T C G T A C G T A A G T C G T A C C T G A A T C G G C A T G A C T G A C T A G C T

SNAI2/MA0745.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:VAAACCDGTTTDDCHR
-NCACCTGTN------
 T A G C T C G A C G T A C T G A A T G C G A T C C T A G A C T G G A C T G A C T G C A T C A T G C G T A A G T C G T A C C T G A
A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--VAAACCDGTTTDDCHR
AATATACATGTAAAATT-
 A C G T A C G T T A G C T C G A C G T A C T G A A T G C G A T C C T A G A C T G G A C T G A C T G C A T C A T G C G T A A G T C G T A C C T G A
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T A C G T

PH0085.1_Irx4/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--VAAACCDGTTTDDCHR
AATATACATGTAAAACA-
 A C G T A C G T T A G C T C G A C G T A C T G A A T G C G A T C C T A G A C T G G A C T G A C T G C A T C A T G C G T A A G T C G T A C C T G A
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--VAAACCDGTTTDDCHR
AAAATACATGTAATACT-
 A C G T A C G T T A G C T C G A C G T A C T G A A T G C G A T C C T A G A C T G G A C T G A C T G C A T C A T G C G T A A G T C G T A C C T G A
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----VAAACCDGTTTDDCHR
GANGTTAACTAGTTTNN---
 A C G T A C G T A C G T A C G T T A G C T C G A C G T A C T G A A T G C G A T C C T A G A C T G G A C T G A C T G C A T C A T G C G T A A G T C G T A C C T G A
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C A C G T A C G T A C G T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.59
Offset:-10
Orientation:forward strand
Alignment:----------VAAACCDGTTTDDCHR
NAAACCGGTTNNAACCGGTT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A C G T A C T G A A T G C G A T C C T A G A C T G G A C T G A C T G C A T C A T G C G T A A G T C G T A C C T G A
T G A C T C G A C T G A C T G A A T G C G A T C C T A G T A C G G A C T G A C T G A T C T C G A C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-VAAACCDGTTTDDCHR
ANCCACCTGTTGCNC--
 A C G T T A G C T C G A C G T A C T G A A T G C G A T C C T A G A C T G G A C T G A C T G C A T C A T G C G T A A G T C G T A C C T G A
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C A C G T A C G T