Information for 6-TATVCCATCCACCCTG (Motif 7)

A C G T C G T A C G A T T C A G A T G C A G T C C G T A A C G T A T G C G T A C C G T A A T G C G T A C G T A C A C G T A C T G
Reverse Opposite:
A G T C G T C A A C T G A C T G A T C G A C G T A C T G A T C G C G T A A C G T A C T G A T C G A G T C C G T A C G A T C G T A
p-value:1e-13
log p-value:-3.217e+01
Information Content per bp:1.778
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.3 +/- 24.5bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TATVCCATCCACCCTG
---GYCATCMATCAT-
 A C G T C G T A C G A T T C A G A T G C A G T C C G T A A C G T A T G C G T A C C G T A A T G C G T A C G T A C A C G T A C T G
A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TATVCCATCCACCCTG
--GGCCATTAAC----
 A C G T C G T A C G A T T C A G A T G C A G T C C G T A A C G T A T G C G T A C C G T A A T G C G T A C G T A C A C G T A C T G
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.54
Offset:6
Orientation:forward strand
Alignment:TATVCCATCCACCCTG
------ATCCAC----
 A C G T C G T A C G A T T C A G A T G C A G T C C G T A A C G T A T G C G T A C C G T A A T G C G T A C G T A C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TATVCCATCCACCCTG
ACTATGCCAACCTACC--
 A C G T A C G T A C G T C G T A C G A T T C A G A T G C A G T C C G T A A C G T A T G C G T A C C G T A A T G C G T A C G T A C A C G T A C T G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TATVCCATCCACCCTG
--TCCAATCCACA---
 A C G T C G T A C G A T T C A G A T G C A G T C C G T A A C G T A T G C G T A C C G T A A T G C G T A C G T A C A C G T A C T G
A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:forward strand
Alignment:TATVCCATCCACCCTG
---GCCATAAATCA--
 A C G T C G T A C G A T T C A G A T G C A G T C C G T A A C G T A T G C G T A C C G T A A T G C G T A C G T A C A C G T A C T G
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TATVCCATCCACCCTG-
TCACCCATCAATAAACA
 A C G T C G T A C G A T T C A G A T G C A G T C C G T A A C G T A T G C G T A C C G T A A T G C G T A C G T A C A C G T A C T G A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TATVCCATCCACCCTG
--RGCCATYAATCA--
 A C G T C G T A C G A T T C A G A T G C A G T C C G T A A C G T A T G C G T A C C G T A A T G C G T A C G T A C A C G T A C T G
A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:TATVCCATCCACCCTG
---SSAATCCACANN-
 A C G T C G T A C G A T T C A G A T G C A G T C C G T A A C G T A T G C G T A C C G T A A T G C G T A C G T A C A C G T A C T G
A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:10
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--TATVCCATCCACCCTG
ANNTNCCCACCCANNAC-
 A C G T A C G T A C G T C G T A C G A T T C A G A T G C A G T C C G T A A C G T A T G C G T A C C G T A A T G C G T A C G T A C A C G T A C T G
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C A C G T