Information for 9-KGAATTATATWTTCMC (Motif 12)

C A G T A T C G C G T A C G T A A G C T G C A T C G T A C G A T C T G A A G C T G C T A A G C T C G A T A G T C T G C A A G T C
Reverse Opposite:
T C A G A C G T A C T G C G T A C T G A C G A T C T G A G A C T C G T A A C G T C G T A C T G A A C G T C G A T T A G C G T C A
p-value:1e-11
log p-value:-2.759e+01
Information Content per bp:1.678
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif21.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets28.5 +/- 19.2bp
Average Position of motif in Background44.4 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:KGAATTATATWTTCMC
TGAATTATGCAT----
 C A G T A T C G C G T A C G T A A G C T G C A T C G T A C G A T C T G A A G C T G C T A A G C T C G A T A G T C T G C A A G T C
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:KGAATTATATWTTCMC
--AATTATT-------
 C A G T A T C G C G T A C G T A A G C T G C A T C G T A C G A T C T G A A G C T G C T A A G C T C G A T A G T C T G C A A G T C
A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Dlx2/MA0885.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:KGAATTATATWTTCMC
GCAATTAA--------
 C A G T A T C G C G T A C G T A A G C T G C A T C G T A C G A T C T G A A G C T G C T A A G C T C G A T A G T C T G C A A G T C
T A C G G A T C G T C A G T C A A C G T A C G T C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Dlx3/MA0880.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:KGAATTATATWTTCMC
CCAATTAC--------
 C A G T A T C G C G T A C G T A A G C T G C A T C G T A C G A T C T G A A G C T G C T A A G C T C G A T A G T C T G C A A G T C
T A G C G A T C G T C A G T C A G C A T A G C T G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:KGAATTATATWTTCMC
-AAATTAATTAATC--
 C A G T A T C G C G T A C G T A A G C T G C A T C G T A C G A T C T G A A G C T G C T A A G C T C G A T A G T C T G C A A G T C
A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C A C G T A C G T

Dlx4/MA0881.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:KGAATTATATWTTCMC
CCAATTAC--------
 C A G T A T C G C G T A C G T A A G C T G C A T C G T A C G A T C T G A A G C T G C T A A G C T C G A T A G T C T G C A A G T C
T A G C G A T C G T C A G T C A G C A T A G C T G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MNX1/MA0707.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-KGAATTATATWTTCMC
GGTAATTAAA-------
 A C G T C A G T A T C G C G T A C G T A A G C T G C A T C G T A C G A T C T G A A G C T G C T A A G C T C G A T A G T C T G C A A G T C
C T A G T A C G A G C T G T C A G T C A G A C T C G A T C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

DLX6/MA0882.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:KGAATTATATWTTCMC
CCAATTAC--------
 C A G T A T C G C G T A C G T A A G C T G C A T C G T A C G A T C T G A A G C T G C T A A G C T C G A T A G T C T G C A A G T C
T A G C G A T C G T C A G T C A C G A T A G C T G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--KGAATTATATWTTCMC
CATTAATTATTCAT----
 A C G T A C G T C A G T A T C G C G T A C G T A A G C T G C A T C G T A C G A T C T G A A G C T G C T A A G C T C G A T A G T C T G C A A G T C
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T A C G T A C G T A C G T A C G T

SHOX/MA0630.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:KGAATTATATWTTCMC
NCAATTAN--------
 C A G T A T C G C G T A C G T A A G C T G C A T C G T A C G A T C T G A A G C T G C T A A G C T C G A T A G T C T G C A A G T C
A G T C G A T C G C T A G T C A A G C T A G C T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T