Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 736)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45810)	% of Background Sequences with Motif
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-259	-5.983e+02	0.0000	446.0	60.60%	4251.2	9.28%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-259	-5.973e+02	0.0000	479.0	65.08%	5234.6	11.43%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-257	-5.921e+02	0.0000	436.0	59.24%	4041.6	8.83%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-252	-5.811e+02	0.0000	391.0	53.12%	3022.5	6.60%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-200	-4.620e+02	0.0000	254.0	34.51%	1225.1	2.68%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-183	-4.225e+02	0.0000	330.0	44.84%	3016.2	6.59%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-157	-3.635e+02	0.0000	347.0	47.15%	4164.4	9.09%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-151	-3.498e+02	0.0000	320.0	43.48%	3570.8	7.80%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-143	-3.315e+02	0.0000	327.0	44.43%	4012.1	8.76%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-137	-3.165e+02	0.0000	252.0	34.24%	2226.7	4.86%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-125	-2.880e+02	0.0000	276.0	37.50%	3150.7	6.88%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-113	-2.609e+02	0.0000	206.0	27.99%	1742.1	3.80%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-83	-1.933e+02	0.0000	298.0	40.49%	5518.0	12.05%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-23	-5.369e+01	0.0000	31.0	4.21%	150.0	0.33%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-13	-3.125e+01	0.0000	29.0	3.94%	293.8	0.64%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-11	-2.620e+01	0.0000	120.0	16.30%	3870.8	8.45%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-10	-2.471e+01	0.0000	140.0	19.02%	4909.0	10.72%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-6	-1.480e+01	0.0000	113.0	15.35%	4364.7	9.53%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-5	-1.254e+01	0.0001	109.0	14.81%	4373.4	9.55%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-5	-1.200e+01	0.0001	43.0	5.84%	1270.4	2.77%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-4	-1.150e+01	0.0002	83.0	11.28%	3165.5	6.91%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-4	-1.122e+01	0.0002	22.0	2.99%	472.5	1.03%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-4	-1.055e+01	0.0004	53.0	7.20%	1803.4	3.94%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-4	-1.040e+01	0.0005	58.0	7.88%	2047.6	4.47%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-4	-1.008e+01	0.0006	85.0	11.55%	3397.2	7.42%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-9.408e+00	0.0011	16.0	2.17%	318.8	0.70%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-3	-8.903e+00	0.0018	38.0	5.16%	1229.5	2.69%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-3	-8.588e+00	0.0024	37.0	5.03%	1204.3	2.63%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-3	-8.104e+00	0.0038	59.0	8.02%	2285.1	4.99%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-3	-7.959e+00	0.0042	74.0	10.05%	3056.4	6.68%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-3	-7.884e+00	0.0044	18.0	2.45%	440.9	0.96%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-3	-7.765e+00	0.0048	172.0	23.37%	8426.0	18.40%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-3	-7.564e+00	0.0057	17.0	2.31%	414.8	0.91%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-3	-7.286e+00	0.0073	57.0	7.74%	2263.9	4.94%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-7.274e+00	0.0073	44.0	5.98%	1625.1	3.55%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3	-7.150e+00	0.0079	35.0	4.76%	1209.7	2.64%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-3	-7.103e+00	0.0081	20.0	2.72%	552.2	1.21%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-3	-7.073e+00	0.0081	52.0	7.07%	2034.6	4.44%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-6.706e+00	0.0114	13.0	1.77%	295.1	0.64%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-6.702e+00	0.0114	12.0	1.63%	259.4	0.57%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-2	-6.655e+00	0.0114	65.0	8.83%	2737.1	5.98%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-2	-6.548e+00	0.0124	23.0	3.12%	707.9	1.55%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-6.168e+00	0.0177	158.0	21.47%	7924.9	17.31%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-6.141e+00	0.0178	4.0	0.54%	33.6	0.07%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-6.022e+00	0.0196	29.0	3.94%	1011.5	2.21%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-2	-5.965e+00	0.0203	42.0	5.71%	1642.1	3.59%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.868e+00	0.0219	177.0	24.05%	9079.3	19.83%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-2	-5.856e+00	0.0219	27.0	3.67%	930.8	2.03%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-2	-5.790e+00	0.0227	2.0	0.27%	5.4	0.01%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.729e+00	0.0237	19.0	2.58%	579.7	1.27%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-2	-5.646e+00	0.0252	46.0	6.25%	1874.1	4.09%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-5.616e+00	0.0255	50.0	6.79%	2081.9	4.55%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-5.554e+00	0.0266	23.0	3.12%	767.1	1.68%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-5.496e+00	0.0277	32.0	4.35%	1194.9	2.61%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-2	-5.488e+00	0.0277	21.0	2.85%	681.9	1.49%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-5.439e+00	0.0282	14.0	1.90%	383.4	0.84%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-5.394e+00	0.0290	34.0	4.62%	1300.7	2.84%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-5.253e+00	0.0328	25.0	3.40%	880.8	1.92%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-5.050e+00	0.0395	21.0	2.85%	709.8	1.55%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-2	-5.001e+00	0.0409	106.0	14.40%	5201.2	11.36%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-2	-4.900e+00	0.0444	62.0	8.42%	2799.4	6.11%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-4.869e+00	0.0451	7.0	0.95%	138.5	0.30%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-4.865e+00	0.0451	27.0	3.67%	1005.6	2.20%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-4.798e+00	0.0469	9.0	1.22%	212.6	0.46%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-4.704e+00	0.0508	168.0	22.83%	8821.0	19.26%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-2	-4.676e+00	0.0514	53.0	7.20%	2350.6	5.13%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-4.652e+00	0.0514	7.0	0.95%	144.8	0.32%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-4.652e+00	0.0514	7.0	0.95%	144.8	0.32%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-4.637e+00	0.0514	86.0	11.68%	4150.3	9.06%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-1	-4.591e+00	0.0527	62.0	8.42%	2843.1	6.21%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-4.457e+00	0.0595	43.0	5.84%	1852.1	4.04%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-4.287e+00	0.0695	9.0	1.22%	231.2	0.50%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-4.272e+00	0.0696	36.0	4.89%	1511.7	3.30%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-4.211e+00	0.0729	33.0	4.48%	1364.4	2.98%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-3.978e+00	0.0909	16.0	2.17%	551.8	1.21%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.898e+00	0.0971	102.0	13.86%	5194.0	11.34%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1	-3.893e+00	0.0971	65.0	8.83%	3116.3	6.81%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-3.877e+00	0.0971	32.0	4.35%	1349.8	2.95%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-3.854e+00	0.0976	42.0	5.71%	1875.9	4.10%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-3.820e+00	0.0997	88.0	11.96%	4415.1	9.64%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-3.566e+00	0.1270	61.0	8.29%	2951.9	6.45%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.404e+00	0.1476	8.0	1.09%	228.7	0.50%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.349e+00	0.1540	6.0	0.82%	149.6	0.33%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-3.344e+00	0.1540	17.0	2.31%	646.2	1.41%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-3.310e+00	0.1564	32.0	4.35%	1416.1	3.09%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-3.298e+00	0.1564	3.0	0.41%	45.4	0.10%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-3.294e+00	0.1564	46.0	6.25%	2171.8	4.74%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-3.282e+00	0.1564	25.0	3.40%	1054.2	2.30%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.281e+00	0.1564	13.0	1.77%	459.5	1.00%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-3.239e+00	0.1586	13.0	1.77%	462.4	1.01%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.138e+00	0.1735	12.0	1.63%	422.6	0.92%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.132e+00	0.1735	10.0	1.36%	330.9	0.72%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-3.045e+00	0.1863	15.0	2.04%	573.1	1.25%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-2.973e+00	0.1980	14.0	1.90%	530.3	1.16%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.958e+00	0.1990	29.0	3.94%	1302.3	2.84%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.936e+00	0.2012	34.0	4.62%	1573.4	3.44%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-1	-2.913e+00	0.2038	12.0	1.63%	438.8	0.96%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.868e+00	0.2110	31.0	4.21%	1421.8	3.11%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.839e+00	0.2151	32.0	4.35%	1479.9	3.23%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-2.824e+00	0.2162	67.0	9.10%	3432.9	7.50%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.713e+00	0.2390	10.0	1.36%	357.1	0.78%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-2.701e+00	0.2395	15.0	2.04%	603.6	1.32%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-2.698e+00	0.2395	39.0	5.30%	1884.0	4.11%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.610e+00	0.2573	74.0	10.05%	3882.0	8.48%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-2.563e+00	0.2671	15.0	2.04%	617.0	1.35%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.405e+00	0.3100	9.0	1.22%	331.7	0.72%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.392e+00	0.3110	46.0	6.25%	2330.2	5.09%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-2.334e+00	0.3267	11.0	1.49%	435.2	0.95%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.302e+00	0.3341	30.0	4.08%	1451.9	3.17%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-2.300e+00	0.3341	59.0	8.02%	3092.5	6.75%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.293e+00	0.3341	51.0	6.93%	2635.8	5.76%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.272e+00	0.3351	5.0	0.68%	153.5	0.34%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.256e+00	0.3376	6.0	0.82%	199.3	0.44%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.227e+00	0.3445	3.0	0.41%	71.4	0.16%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.137e+00	0.3734	73.0	9.92%	3946.8	8.62%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.133e+00	0.3734	25.0	3.40%	1202.2	2.63%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.095e+00	0.3830	33.0	4.48%	1654.4	3.61%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.065e+00	0.3912	30.0	4.08%	1491.6	3.26%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.005e+00	0.4120	1.0	0.14%	9.7	0.02%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.994e+00	0.4131	2.0	0.27%	40.5	0.09%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.974e+00	0.4177	7.0	0.95%	265.6	0.58%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.966e+00	0.4179	40.0	5.43%	2077.2	4.54%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.960e+00	0.4179	12.0	1.63%	522.7	1.14%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.953e+00	0.4179	24.0	3.26%	1175.9	2.57%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.927e+00	0.4238	25.0	3.40%	1235.9	2.70%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.893e+00	0.4353	3.0	0.41%	83.3	0.18%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.876e+00	0.4389	16.0	2.17%	746.3	1.63%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.846e+00	0.4490	32.0	4.35%	1645.3	3.59%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.841e+00	0.4490	78.0	10.60%	4328.8	9.45%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.762e+00	0.4806	12.0	1.63%	544.3	1.19%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.745e+00	0.4855	33.0	4.48%	1723.5	3.76%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.740e+00	0.4855	28.0	3.80%	1438.1	3.14%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.727e+00	0.4865	3.0	0.41%	90.2	0.20%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.721e+00	0.4865	13.0	1.77%	603.8	1.32%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.711e+00	0.4871	6.0	0.82%	235.3	0.51%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.705e+00	0.4871	3.0	0.41%	91.5	0.20%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.702e+00	0.4871	104.0	14.13%	5927.4	12.94%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.701e+00	0.4871	18.0	2.45%	881.4	1.92%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.701e+00	0.4871	15.0	2.04%	715.3	1.56%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.687e+00	0.4871	11.0	1.49%	499.6	1.09%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.671e+00	0.4871	29.0	3.94%	1509.5	3.30%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.648e+00	0.4934	2.0	0.27%	50.1	0.11%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.646e+00	0.4934	12.0	1.63%	558.4	1.22%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.645e+00	0.4934	10.0	1.36%	450.7	0.98%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.642e+00	0.4934	5.0	0.68%	190.4	0.42%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.564e+00	0.5220	14.0	1.90%	679.4	1.48%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.550e+00	0.5258	14.0	1.90%	681.7	1.49%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.520e+00	0.5377	36.0	4.89%	1948.9	4.26%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.494e+00	0.5484	26.0	3.53%	1373.1	3.00%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.477e+00	0.5539	12.0	1.63%	580.2	1.27%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.469e+00	0.5548	4.0	0.54%	152.5	0.33%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.453e+00	0.5598	47.0	6.39%	2613.7	5.71%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.448e+00	0.5598	16.0	2.17%	809.2	1.77%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.441e+00	0.5598	30.0	4.08%	1617.8	3.53%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.440e+00	0.5598	4.0	0.54%	154.2	0.34%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.434e+00	0.5598	21.0	2.85%	1097.8	2.40%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.416e+00	0.5624	22.0	2.99%	1158.0	2.53%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.387e+00	0.5757	13.0	1.77%	649.9	1.42%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.382e+00	0.5757	16.0	2.17%	820.6	1.79%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.381e+00	0.5757	7.0	0.95%	317.3	0.69%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.355e+00	0.5833	51.0	6.93%	2881.6	6.29%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.349e+00	0.5833	24.0	3.26%	1288.8	2.81%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.343e+00	0.5833	22.0	2.99%	1174.0	2.56%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.324e+00	0.5904	8.0	1.09%	378.8	0.83%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.288e+00	0.6083	7.0	0.95%	327.4	0.72%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.251e+00	0.6276	9.0	1.22%	444.0	0.97%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.246e+00	0.6276	29.0	3.94%	1606.6	3.51%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.236e+00	0.6295	38.0	5.16%	2143.3	4.68%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.222e+00	0.6346	14.0	1.90%	733.5	1.60%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.209e+00	0.6392	12.0	1.63%	620.8	1.36%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.206e+00	0.6392	17.0	2.31%	910.8	1.99%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.205e+00	0.6392	6.0	0.82%	281.4	0.61%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.205e+00	0.6392	14.0	1.90%	736.6	1.61%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.197e+00	0.6392	12.0	1.63%	622.1	1.36%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.181e+00	0.6392	26.0	3.53%	1445.9	3.16%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.176e+00	0.6392	46.0	6.25%	2642.0	5.77%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.171e+00	0.6392	22.0	2.99%	1211.4	2.65%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.171e+00	0.6392	2.0	0.27%	70.8	0.15%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.152e+00	0.6427	2.0	0.27%	71.4	0.16%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.128e+00	0.6545	8.0	1.09%	403.4	0.88%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.121e+00	0.6552	3.0	0.41%	125.2	0.27%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.106e+00	0.6620	1.0	0.14%	25.8	0.06%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.104e+00	0.6620	43.0	5.84%	2485.7	5.43%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.058e+00	0.6865	10.0	1.36%	529.1	1.16%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.052e+00	0.6872	102.0	13.86%	6099.6	13.32%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.034e+00	0.6956	10.0	1.36%	533.8	1.17%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.014e+00	0.7063	17.0	2.31%	951.9	2.08%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.007e+00	0.7071	37.0	5.03%	2156.6	4.71%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.003e+00	0.7071	6.0	0.82%	305.3	0.67%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-9.954e-01	0.7080	90.0	12.23%	5394.5	11.78%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-9.787e-01	0.7162	14.0	1.90%	780.7	1.70%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-9.727e-01	0.7167	100.0	13.59%	6020.9	13.15%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-9.627e-01	0.7202	105.0	14.27%	6333.1	13.83%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-9.608e-01	0.7202	7.0	0.95%	369.5	0.81%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-9.542e-01	0.7202	16.0	2.17%	905.3	1.98%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-9.528e-01	0.7202	24.0	3.26%	1387.2	3.03%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-9.506e-01	0.7202	4.0	0.54%	196.5	0.43%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-9.433e-01	0.7202	10.0	1.36%	549.4	1.20%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.406e-01	0.7202	7.0	0.95%	372.1	0.81%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-9.404e-01	0.7202	20.0	2.72%	1149.5	2.51%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-9.391e-01	0.7202	2.0	0.27%	84.9	0.19%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-9.325e-01	0.7202	78.0	10.60%	4691.6	10.25%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-9.267e-01	0.7202	101.0	13.72%	6108.6	13.34%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-9.109e-01	0.7202	2.0	0.27%	86.4	0.19%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-8.971e-01	0.7240	2.0	0.27%	87.5	0.19%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-8.573e-01	0.7497	2.0	0.27%	90.9	0.20%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-8.464e-01	0.7543	8.0	1.09%	447.9	0.98%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-8.372e-01	0.7576	4.0	0.54%	209.5	0.46%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-8.293e-01	0.7599	20.0	2.72%	1180.4	2.58%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.177e-01	0.7652	199.0	27.04%	12244.6	26.74%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.961e-01	0.7782	11.0	1.49%	640.0	1.40%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.904e-01	0.7789	15.0	2.04%	885.1	1.93%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.838e-01	0.7804	2.0	0.27%	96.1	0.21%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.661e-01	0.7906	16.0	2.17%	953.6	2.08%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-7.546e-01	0.7961	12.0	1.63%	710.8	1.55%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.542e-01	0.7961	37.0	5.03%	2253.6	4.92%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-7.023e-01	0.8310	9.0	1.22%	537.4	1.17%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.891e-01	0.8382	9.0	1.22%	540.8	1.18%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-6.789e-01	0.8430	1.0	0.14%	44.7	0.10%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.624e-01	0.8531	4.0	0.54%	233.3	0.51%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.576e-01	0.8534	2.0	0.27%	108.2	0.24%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-6.392e-01	0.8652	30.0	4.08%	1868.5	4.08%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-6.341e-01	0.8657	1.0	0.14%	47.8	0.10%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.142e-01	0.8792	9.0	1.22%	558.2	1.22%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-6.140e-01	0.8792	6.0	0.82%	368.7	0.81%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.044e-01	0.8801	19.0	2.58%	1192.1	2.60%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.996e-01	0.8804	6.0	0.82%	371.1	0.81%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.804e-01	0.8935	8.0	1.09%	503.1	1.10%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.792e-01	0.8935	17.0	2.31%	1075.0	2.35%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.645e-01	0.8999	42.0	5.71%	2659.4	5.81%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.644e-01	0.8999	10.0	1.36%	635.9	1.39%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.472e-01	0.9077	93.0	12.64%	5874.2	12.83%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.470e-01	0.9077	40.0	5.43%	2543.6	5.56%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-5.384e-01	0.9080	2.0	0.27%	122.6	0.27%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.344e-01	0.9080	20.0	2.72%	1283.9	2.80%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.214e-01	0.9119	1.0	0.14%	56.2	0.12%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-5.214e-01	0.9119	1.0	0.14%	56.9	0.12%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-4.999e-01	0.9277	1.0	0.14%	58.7	0.13%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-4.827e-01	0.9399	7.0	0.95%	464.5	1.01%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.825e-01	0.9399	5.0	0.68%	332.4	0.73%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.672e-01	0.9466	57.0	7.74%	3671.7	8.02%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.571e-01	0.9523	17.0	2.31%	1124.9	2.46%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-4.564e-01	0.9523	4.0	0.54%	271.4	0.59%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-4.510e-01	0.9523	1.0	0.14%	63.1	0.14%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-4.439e-01	0.9531	158.0	21.47%	10057.7	21.97%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-4.374e-01	0.9555	21.0	2.85%	1392.9	3.04%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.311e-01	0.9576	3.0	0.41%	208.6	0.46%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-4.308e-01	0.9576	9.0	1.22%	612.7	1.34%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.278e-01	0.9576	34.0	4.62%	2234.4	4.88%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.186e-01	0.9580	2.0	0.27%	140.1	0.31%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.161e-01	0.9580	1.0	0.14%	67.3	0.15%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-4.079e-01	0.9607	1.0	0.14%	68.5	0.15%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.042e-01	0.9607	5.0	0.68%	352.2	0.77%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-3.904e-01	0.9699	36.0	4.89%	2388.5	5.22%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-3.721e-01	0.9840	74.0	10.05%	4836.0	10.56%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.697e-01	0.9840	5.0	0.68%	362.0	0.79%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.618e-01	0.9863	25.0	3.40%	1695.6	3.70%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.531e-01	0.9911	60.0	8.15%	3960.2	8.65%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.481e-01	0.9922	14.0	1.90%	979.8	2.14%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.255e-01	1.0000	20.0	2.72%	1390.2	3.04%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.214e-01	1.0000	34.0	4.62%	2311.5	5.05%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-3.067e-01	1.0000	24.0	3.26%	1667.4	3.64%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.061e-01	1.0000	57.0	7.74%	3815.6	8.33%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-3.058e-01	1.0000	34.0	4.62%	2324.3	5.08%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.940e-01	1.0000	1.0	0.14%	85.5	0.19%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.918e-01	1.0000	62.0	8.42%	4154.0	9.07%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.862e-01	1.0000	61.0	8.29%	4095.0	8.94%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.767e-01	1.0000	3.0	0.41%	248.0	0.54%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.756e-01	1.0000	11.0	1.49%	816.0	1.78%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.627e-01	1.0000	2.0	0.27%	174.7	0.38%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.621e-01	1.0000	25.0	3.40%	1768.6	3.86%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.592e-01	1.0000	2.0	0.27%	175.0	0.38%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.591e-01	1.0000	13.0	1.77%	962.9	2.10%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.513e-01	1.0000	19.0	2.58%	1375.8	3.00%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.475e-01	1.0000	19.0	2.58%	1378.5	3.01%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.461e-01	1.0000	32.0	4.35%	2247.1	4.91%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.403e-01	1.0000	33.0	4.48%	2319.7	5.07%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.367e-01	1.0000	6.0	0.82%	484.4	1.06%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.251e-01	1.0000	17.0	2.31%	1261.0	2.75%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.232e-01	1.0000	1.0	0.14%	100.4	0.22%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.224e-01	1.0000	42.0	5.71%	2933.8	6.41%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.219e-01	1.0000	11.0	1.49%	848.8	1.85%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.170e-01	1.0000	10.0	1.36%	781.2	1.71%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.077e-01	1.0000	1.0	0.14%	104.4	0.23%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.072e-01	1.0000	66.0	8.97%	4524.9	9.88%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.054e-01	1.0000	3.0	0.41%	273.4	0.60%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.008e-01	1.0000	8.0	1.09%	649.0	1.42%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.946e-01	1.0000	5.0	0.68%	432.9	0.95%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.934e-01	1.0000	1.0	0.14%	108.1	0.24%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.928e-01	1.0000	31.0	4.21%	2239.0	4.89%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.883e-01	1.0000	29.0	3.94%	2109.5	4.61%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.867e-01	1.0000	1.0	0.14%	110.1	0.24%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.679e-01	1.0000	1.0	0.14%	116.5	0.25%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.666e-01	1.0000	8.0	1.09%	673.3	1.47%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.643e-01	1.0000	105.0	14.27%	7131.1	15.57%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.594e-01	1.0000	1.0	0.14%	119.9	0.26%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.554e-01	1.0000	87.0	11.82%	5985.4	13.07%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.539e-01	1.0000	3.0	0.41%	298.3	0.65%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.381e-01	1.0000	4.0	0.54%	389.5	0.85%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.364e-01	1.0000	7.0	0.95%	623.2	1.36%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.363e-01	1.0000	1.0	0.14%	129.0	0.28%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.354e-01	1.0000	2.0	0.27%	223.4	0.49%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.267e-01	1.0000	9.0	1.22%	782.2	1.71%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.149e-01	1.0000	3.0	0.41%	323.2	0.71%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.130e-01	1.0000	4.0	0.54%	408.3	0.89%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.121e-01	1.0000	172.0	23.37%	11582.6	25.30%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.106e-01	1.0000	4.0	0.54%	410.2	0.90%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.036e-01	1.0000	1.0	0.14%	144.3	0.32%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.020e-01	1.0000	7.0	0.95%	657.0	1.43%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.019e-01	1.0000	1.0	0.14%	145.8	0.32%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-9.521e-02	1.0000	1.0	0.14%	149.0	0.33%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-8.540e-02	1.0000	2.0	0.27%	257.7	0.56%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-8.319e-02	1.0000	1.0	0.14%	157.5	0.34%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.682e-02	1.0000	3.0	0.41%	357.6	0.78%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-7.295e-02	1.0000	7.0	0.95%	695.2	1.52%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-6.891e-02	1.0000	21.0	2.85%	1749.0	3.82%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-6.472e-02	1.0000	1.0	0.14%	172.4	0.38%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.976e-02	1.0000	4.0	0.54%	467.1	1.02%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.865e-02	1.0000	10.0	1.36%	956.3	2.09%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.572e-02	1.0000	1.0	0.14%	181.1	0.40%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.676e-02	1.0000	14.0	1.90%	1292.2	2.82%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.621e-02	1.0000	67.0	9.10%	5014.9	10.95%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.512e-02	1.0000	12.0	1.63%	1144.6	2.50%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.402e-02	1.0000	37.0	5.03%	2965.5	6.48%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.891e-02	1.0000	2.0	0.27%	336.8	0.74%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.836e-02	1.0000	1.0	0.14%	222.7	0.49%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-2.244e-02	1.0000	10.0	1.36%	1071.3	2.34%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.220e-02	1.0000	2.0	0.27%	355.5	0.78%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.385e-02	1.0000	4.0	0.54%	595.2	1.30%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.196e-02	1.0000	29.0	3.94%	2619.4	5.72%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.088e-02	1.0000	29.0	3.94%	2634.4	5.75%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.055e-02	1.0000	25.0	3.40%	2339.5	5.11%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.667e-03	1.0000	1.0	0.14%	288.9	0.63%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.846e-03	1.0000	4.0	0.54%	682.1	1.49%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.618e-03	1.0000	13.0	1.77%	1499.7	3.28%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	23.2	0.05%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	107.2	0.23%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	20.4	0.04%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	0.000e+00	1.0000	0.0	0.00%	140.0	0.31%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	8.8	0.02%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	0.000e+00	1.0000	0.0	0.00%	63.2	0.14%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	0.000e+00	1.0000	0.0	0.00%	107.3	0.23%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	3.9	0.01%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	0.000e+00	1.0000	0.0	0.00%	75.1	0.16%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	55.1	0.12%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	0.000e+00	1.0000	0.0	0.00%	47.9	0.10%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	62.2	0.14%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	82.8	0.18%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	103.8	0.23%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	352.0	0.77%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	17.5	0.04%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	3.9	0.01%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	19.5	0.04%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	32.9	0.07%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	0.000e+00	1.0000	0.0	0.00%	73.8	0.16%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	0.000e+00	1.0000	0.0	0.00%	150.2	0.33%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	0.0	0.00%	57.8	0.13%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	10.9	0.02%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	2.5	0.01%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	28.9	0.06%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	29.6	0.06%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	11.2	0.02%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	0.000e+00	1.0000	0.0	0.00%	81.6	0.18%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	0.000e+00	1.0000	0.0	0.00%	26.2	0.06%