Information for 4-SMCTCMATRATAA (Motif 3)

A T G C G T C A A G T C A C G T A G T C G T C A C G T A A C G T C T A G C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T G T C A A C G T A G T C C G T A A C G T C A G T A C T G C G T A A C T G A C G T A T C G
p-value:1e-13
log p-value:-3.140e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.5 +/- 32.4bp
Average Position of motif in Background37.2 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0069.1_Sox21_1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:SMCTCMATRATAA-----
--NNTAATTATAATNANN
 A T G C G T C A A G T C A C G T A G T C G T C A C G T A A C G T C T A G C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

PH0150.1_Pou4f3/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-SMCTCMATRATAA--
GACNTCATTAATAANN
 A C G T A T G C G T C A A G T C A C G T A G T C G T C A C G T A A C G T C T A G C G T A A C G T C G T A C G T A A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:SMCTCMATRATAA-----
--TATAATTATAATATTC
 A T G C G T C A A G T C A C G T A G T C G T C A C G T A A C G T C T A G C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0064.1_Sox14_1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:SMCTCMATRATAA-----
--GCTAATTATAATTATC
 A T G C G T C A A G T C A C G T A G T C G T C A C G T A A C G T C T A G C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

ZNF410/MA0752.1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--SMCTCMATRATAA--
TCCATCCCATAATACTC
 A C G T A C G T A T G C G T C A A G T C A C G T A G T C G T C A C G T A A C G T C T A G C G T A A C G T C G T A C G T A A C G T A C G T
A C G T T G A C G A T C G C T A C A G T G T A C G T A C A T G C G T C A A G C T G T C A T C G A G A C T C T G A G T A C A G C T G T A C

PB0174.1_Sox30_2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:SMCTCMATRATAA-----
--NCGTATTATAATCNTA
 A T G C G T C A A G T C A C G T A G T C G T C A C G T A A C G T C T A G C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

GATA5/MA0766.1/Jaspar

Match Rank:7
Score:0.57
Offset:7
Orientation:forward strand
Alignment:SMCTCMATRATAA--
-------AGATAAGA
 A T G C G T C A A G T C A C G T A G T C G T C A C G T A A C G T C T A G C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C T G C T G A A C G T G C T A C T G A T A C G T C G A

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:SMCTCMATRATAA--
-----NBWGATAAGR
 A T G C G T C A A G T C A C G T A G T C G T C A C G T A A C G T C T A G C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A T G C G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

PB0176.1_Sox5_2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:SMCTCMATRATAA--
NNCTNAATTATGANN
 A T G C G T C A A G T C A C G T A G T C G T C A C G T A A C G T C T A G C G T A A C G T C G T A C G T A A C G T A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---SMCTCMATRATAA
AASCACTCAA------
 A C G T A C G T A C G T A T G C G T C A A G T C A C G T A G T C G T C A C G T A A C G T C T A G C G T A A C G T C G T A C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T