Information for 6-GTTGATTTAC (Motif 3)

A C T G A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A A T G C
Reverse Opposite:
T A C G C G A T G T C A C G T A G T C A A C G T G T A C C G T A C G T A G T A C
p-value:1e-15
log p-value:-3.629e+01
Information Content per bp:1.851
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.97%
Number of Background Sequences with motif118.5
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets46.4 +/- 19.0bp
Average Position of motif in Background51.1 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GTTGATTTAC----
-NTGATTTATGGCC
 A C T G A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A A T G C A C G T A C G T A C G T A C G T
A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GTTGATTTAC----
--TGATTTATGGCC
 A C T G A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GTTGATTTAC---
--TGATTTATGGC
 A C T G A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A A T G C A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTTGATTTAC
-TTGATTGN-
 A C T G A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A A T G C
A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GTTGATTTAC----
--TGATTTATGGCC
 A C T G A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Gfi1/MA0038.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GTTGATTTAC
CNGTGATTTN-
 A C G T A C T G A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A A T G C
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GTTGATTTAC
NNTGTGGATTSS-
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A A T G C
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GTTGATTTAC---
NNNNGTTGATTGGGTCG
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A A T G C A C G T A C G T A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTTGATTTAC--
TTTGATTGATGN
 A C T G A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A A T G C A C G T A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTTGATTTAC
ATTGATTYND
 A C T G A C G T A C G T A C T G G T C A A C G T A C G T A C G T C G T A A T G C
C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T