Information for 5-KCYYTGCCAWGTT (Motif 5)

A C G T A G T C A G T C A G C T A C G T A C T G A T G C A G T C C G T A C G T A A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C C G A T A C G T A C T G A T C G A G T C C G T A C T G A C T A G A C T G T G C A
p-value:1e-11
log p-value:-2.540e+01
Information Content per bp:1.875
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.2 +/- 23.4bp
Average Position of motif in Background25.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.71
Offset:3
Orientation:forward strand
Alignment:KCYYTGCCAWGTT
---TTGCCAAG--
 A C G T A G T C A G T C A G C T A C G T A C T G A T G C A G T C C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:KCYYTGCCAWGTT
--GGTGCCAAGT-
 A C G T A G T C A G T C A G C T A C G T A C T G A T G C A G T C C G T A C G T A A C T G A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:KCYYTGCCAWGTT
--CGTGCCAAG--
 A C G T A G T C A G T C A G C T A C G T A C T G A T G C A G T C C G T A C G T A A C T G A C G T A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:KCYYTGCCAWGTT
----TGCCAA---
 A C G T A G T C A G T C A G C T A C G T A C T G A T G C A G T C C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:KCYYTGCCAWGTT-
--GCNGCCATCTTG
 A C G T A G T C A G T C A G C T A C G T A C T G A T G C A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.61
Offset:4
Orientation:forward strand
Alignment:KCYYTGCCAWGTT
----TGTCANYT-
 A C G T A G T C A G T C A G C T A C G T A C T G A T G C A G T C C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:KCYYTGCCAWGTT----
---ATGCCACGTCATCA
 A C G T A G T C A G T C A G C T A C G T A C T G A T G C A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:KCYYTGCCAWGTT-
--GCCGCCATCTTG
 A C G T A G T C A G T C A G C T A C G T A C T G A T G C A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-KCYYTGCCAWGTT-
NNCGTTGCTATGGNN
 A C G T A C G T A G T C A G T C A G C T A C G T A C T G A T G C A G T C C G T A C G T A A C T G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:KCYYTGCCAWGTT
---ATGCCAACC-
 A C G T A G T C A G T C A G C T A C G T A C T G A T G C A G T C C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T