Information for 6-AAACAAAGAG (Motif 2)

G T C A T G C A C G T A A G T C C G T A T C G A C G T A A C T G C T G A T C A G
Reverse Opposite:
A G T C A G C T G T A C G C A T A G C T C G A T T C A G C G A T A C G T A C G T
p-value:1e-13
log p-value:-3.141e+01
Information Content per bp:1.823
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif4.18%
Number of Background Sequences with motif332.7
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets46.8 +/- 22.7bp
Average Position of motif in Background50.7 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0071.1_Sox4_1/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----AAACAAAGAG---
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T G T C A T G C A C G T A A G T C C G T A T C G A C G T A A C T G C T G A T C A G A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----AAACAAAGAG---
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T G T C A T G C A C G T A A G T C C G T A T C G A C G T A A C T G C T G A T C A G A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-AAACAAAGAG
AAAACAAAGG-
 A C G T G T C A T G C A C G T A A G T C C G T A T C G A C G T A A C T G C T G A T C A G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-AAACAAAGAG
GGAACAAAGR-
 A C G T G T C A T G C A C G T A A G T C C G T A T C G A C G T A A C T G C T G A T C A G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-AAACAAAGAG
VRRACAAWGG-
 A C G T G T C A T G C A C G T A A G T C C G T A T C G A C G T A A C T G C T G A T C A G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AAACAAAGAG
AAAACAATGG-
 A C G T G T C A T G C A C G T A A G T C C G T A T C G A C G T A A C T G C T G A T C A G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:7
Score:0.75
Offset:-7
Orientation:forward strand
Alignment:-------AAACAAAGAG
CAAAAGTAAACAAAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A T G C A C G T A A G T C C G T A T C G A C G T A A C T G C T G A T C A G
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AAACAAAGAG
--ACAAAG--
 G T C A T G C A C G T A A G T C C G T A T C G A C G T A A C T G C T G A T C A G
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:9
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----AAACAAAGAG-
AAAGTAAACAAAAATT
 A C G T A C G T A C G T A C G T A C G T G T C A T G C A C G T A A G T C C G T A T C G A C G T A A C T G C T G A T C A G A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

SRY/MA0084.1/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AAACAAAGAG
GTAAACAAT---
 A C G T A C G T G T C A T G C A C G T A A G T C C G T A T C G A C G T A A C T G C T G A T C A G
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T