Information for 8-CCTGCTDGGATGA (Motif 11)

A G T C A G T C A C G T A C T G A G T C C G A T C G T A C T A G A C T G C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C G T C A A C G T T G A C A G T C G C A T C G T A A C T G A G T C C G T A A C T G A C T G
p-value:1e-9
log p-value:-2.195e+01
Information Content per bp:1.842
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.4 +/- 27.0bp
Average Position of motif in Background43.5 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTDGGATGA
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T C G T A C T A G A C T G C G T A A C G T A C T G C G T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTDGGATGA
CCCCCTGCTGTG----
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T C G T A C T A G A C T G C G T A A C G T A C T G C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTDGGATGA
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T C G T A C T A G A C T G C G T A A C G T A C T G C G T A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTDGGATGA
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T C G T A C T A G A C T G C G T A A C G T A C T G C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCTGCTDGGATGA
CCTGCTGAGH---
 A G T C A G T C A C G T A C T G A G T C C G A T C G T A C T A G A C T G C G T A A C G T A C T G C G T A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTDGGATGA
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T C G T A C T A G A C T G C G T A A C G T A C T G C G T A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTDGGATGA
SNGCACCTGCHS------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T C G T A C T A G A C T G C G T A A C G T A C T G C G T A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTGCTDGGATGA-----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T C G T A C T A G A C T G C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

SNAI2/MA0745.1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTDGGATGA
NCACCTGTN-------
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T C G T A C T A G A C T G C G T A A C G T A C T G C G T A
T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCTGCTDGGATGA-----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T C G T A C T A G A C T G C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A