Information for 10-GTGCCAAAGT (Motif 10)

A C T G C G A T T A C G G A T C G T A C C G T A C G T A C T G A C T A G A C G T
Reverse Opposite:
C G T A G A T C G A C T A C G T A C G T A C T G C T A G A T G C C G T A G T A C
p-value:1e-9
log p-value:-2.246e+01
Information Content per bp:1.841
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.43%
Number of Background Sequences with motif153.4
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets56.8 +/- 26.8bp
Average Position of motif in Background48.4 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GTGCCAAAGT
GGTGCCAAGT-
 A C G T A C T G C G A T T A C G G A T C G T A C C G T A C G T A C T G A C T A G A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GTGCCAAAGT
CGTGCCAAG--
 A C G T A C T G C G A T T A C G G A T C G T A C C G T A C G T A C T G A C T A G A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GTGCCAAAGT
-TGCCAA---
 A C T G C G A T T A C G G A T C G T A C C G T A C G T A C T G A C T A G A C G T
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GTGCCAAAGT
TTGCCAAG--
 A C T G C G A T T A C G G A T C G T A C C G T A C G T A C T G A C T A G A C G T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTGCCAAAGT
ATGCCAACC-
 A C T G C G A T T A C G G A T C G T A C C G T A C G T A C T G A C T A G A C G T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GTGCCAAAGT-------
-TGCCAAAATAAACANN
 A C T G C G A T T A C G G A T C G T A C C G T A C G T A C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GTGCCAAAGT--
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T A C G T A C T G C G A T T A C G G A T C G T A C C G T A C G T A C T G A C T A G A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Hnf4a/MA0114.3/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTGCCAAAGT-----
GGGGTCAAAGTCCAAT
 A C G T A C T G C G A T T A C G G A T C G T A C C G T A C G T A C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTGCCAAAGT
ATGCCCACC-
 A C T G C G A T T A C G G A T C G T A C C G T A C G T A C T G A C T A G A C G T
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTGCCAAAGT---
AGAGTCCAAAGTCCA
 A C G T A C G T A C T G C G A T T A C G G A T C G T A C C G T A C G T A C T G A C T A G A C G T A C G T A C G T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A