Information for 1-TRTTTACABA (Motif 1)

C G A T T C A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A
Reverse Opposite:
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A
p-value:1e-281
log p-value:-6.485e+02
Information Content per bp:1.670
Number of Target Sequences with motif530.0
Percentage of Target Sequences with motif71.62%
Number of Background Sequences with motif2577.3
Percentage of Background Sequences with motif13.64%
Average Position of motif in Targets50.5 +/- 19.8bp
Average Position of motif in Background48.6 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:1
Score:0.96
Offset:-3
Orientation:forward strand
Alignment:---TRTTTACABA--
BSNTGTTTACWYWGN
 A C G T A C G T A C G T C G A T T C A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T A C G T
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:TRTTTACABA
TGTTTACTTT
 C G A T T C A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:3
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--TRTTTACABA
CNTGTTTACATA
 A C G T A C G T C G A T T C A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A
A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TRTTTACABA
TGTTTACTTT
 C G A T T C A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

FOXA1/MA0148.3/Jaspar

Match Rank:5
Score:0.95
Offset:-4
Orientation:forward strand
Alignment:----TRTTTACABA-
TCCATGTTTACTTTG
 A C G T A C G T A C G T A C G T C G A T T C A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:6
Score:0.95
Offset:0
Orientation:forward strand
Alignment:TRTTTACABA
TRTTTACTTW
 C G A T T C A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A
A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A

Foxa2/MA0047.2/Jaspar

Match Rank:7
Score:0.95
Offset:0
Orientation:forward strand
Alignment:TRTTTACABA--
TGTTTACTTAGG
 C G A T T C A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T A C G T
A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G

FOXC1/MA0032.2/Jaspar

Match Rank:8
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-TRTTTACABA
ATATTTACATA
 A C G T C G A T T C A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A
C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

FOXD2/MA0847.1/Jaspar

Match Rank:9
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TRTTTACABA
TGTTTAC---
 C G A T T C A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A
G A C T T C A G C G A T C A G T C A G T C T G A A G T C A C G T A C G T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:10
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--TRTTTACABA
TTTGTTTACTTA
 A C G T A C G T C G A T T C A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A
C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A