Information for 3-TGGGAGATGTRTATAG (Motif 3)

C G A T T A C G A T C G C T A G C T G A C T A G G T C A A G C T A C T G A C G T T C G A G A C T G T C A A C G T C G T A C T A G
Reverse Opposite:
A G T C G A C T G T C A A C G T C G T A A G C T C G T A A G T C C T G A C A G T A G T C A G C T A G T C A T G C A G T C C G T A
p-value:1e-16
log p-value:-3.843e+01
Information Content per bp:1.719
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.9 +/- 21.3bp
Average Position of motif in Background55.8 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0086.1_Irx5/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGGAGATGTRTATAG
ANTNNTACATGTANNTN-
 A C G T A C G T C G A T T A C G A T C G C T A G C T G A C T A G G T C A A G C T A C T G A C G T T C G A G A C T G T C A A C G T C G T A C T A G
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGGAGATGTRTATAG
ANTNTTACATGTATNTA-
 A C G T A C G T C G A T T A C G A T C G C T A G C T G A C T A G G T C A A G C T A C T G A C G T T C G A G A C T G T C A A C G T C G T A C T A G
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A A C G T

ZBTB18/MA0698.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGGGAGATGTRTATAG
CATCCAGATGTTC----
 A C G T C G A T T A C G A T C G C T A G C T G A C T A G G T C A A G C T A C T G A C G T T C G A G A C T G T C A A C G T C G T A C T A G
G T A C C G T A A C G T T G A C G T A C C G T A A T C G G T C A A C G T C T A G G A C T C A G T A G T C A C G T A C G T A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TGGGAGATGTRTATAG
ANTTNTACATGTANTTN-
 A C G T A C G T C G A T T A C G A T C G C T A G C T G A C T A G G T C A A G C T A C T G A C G T T C G A G A C T G T C A A C G T C G T A C T A G
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGGGAGATGTRTATAG-
AGGACGCTGTAAAGGGA
 C G A T T A C G A T C G C T A G C T G A C T A G G T C A A G C T A C T G A C G T T C G A G A C T G T C A A C G T C G T A C T A G A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGGGAGATGTRTATAG
ANTATTACATGTANNNN-
 A C G T A C G T C G A T T A C G A T C G C T A G C T G A C T A G G T C A A G C T A C T G A C G T T C G A G A C T G T C A A C G T C G T A C T A G
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T A C G T

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:7
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------TGGGAGATGTRTATAG
GCATTCTGGGAATTGTAGTT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T T A C G A T C G C T A G C T G A C T A G G T C A A G C T A C T G A C G T T C G A G A C T G T C A A C G T C G T A C T A G
T C A G T A G C G T C A A G C T A C G T A G T C A G C T A C T G A C T G C T A G C G T A C T G A C G A T A G C T A C T G A C G T C T G A A C T G A C G T A G C T A C G T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGGGAGATGTRTATAG
NNTATTACATGTANNNT-
 A C G T A C G T C G A T T A C G A T C G C T A G C T G A C T A G G T C A A G C T A C T G A C G T T C G A G A C T G T C A A C G T C G T A C T A G
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:9
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------TGGGAGATGTRTATAG
GCMTBCTGGGAGTTGTAGTY--
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T T A C G A T C G C T A G C T G A C T A G G T C A A G C T A C T G A C G T T C G A G A C T G T C A A C G T C G T A C T A G
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TGGGAGATGTRTATAG
-----AATGTATCAAT
 C G A T T A C G A T C G C T A G C T G A C T A G G T C A A G C T A C T G A C G T T C G A G A C T G T C A A C G T C G T A C T A G
A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T