Information for 19-RAAAATCACTTCACTG (Motif 25)

C T A G C G T A C G T A C G T A C G T A G A C T A T G C G T C A A T G C C G A T A G C T A G T C C G T A T A G C A C G T A T C G
Reverse Opposite:
A T G C C G T A A T C G A C G T T A C G C T G A C G T A A T C G A C G T A T C G C T G A C G A T A C G T G C A T G C A T A G T C
p-value:1e-9
log p-value:-2.161e+01
Information Content per bp:1.750
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif28.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets40.3 +/- 21.1bp
Average Position of motif in Background53.0 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0113.1_Nkx2-4/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RAAAATCACTTCACTG-
-TAAGCCACTTGAAATT
 C T A G C G T A C G T A C G T A C G T A G A C T A T G C G T C A A T G C C G A T A G C T A G T C C G T A T A G C A C G T A T C G A C G T
A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

NKX2-3/MA0672.1/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:forward strand
Alignment:RAAAATCACTTCACTG
----ACCACTTGAA--
 C T A G C G T A C G T A C G T A C G T A G A C T A T G C G T C A A T G C C G A T A G C T A G T C C G T A T A G C A C G T A T C G
A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RAAAATCACTTCACTG-
-TAAGCCACTTGAATTT
 C T A G C G T A C G T A C G T A C G T A G A C T A T G C G T C A A T G C C G A T A G C T A G T C C G T A T A G C A C G T A T C G A C G T
A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:RAAAATCACTTCACTG
-----CCACTTGAA--
 C T A G C G T A C G T A C G T A C G T A G A C T A T G C G T C A A T G C C G A T A G C T A G T C C G T A T A G C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RAAAATCACTTCACTG
AGAAATGACTTCCCT-
 C T A G C G T A C G T A C G T A C G T A G A C T A T G C G T C A A T G C C G A T A G C T A G T C C G T A T A G C A C G T A T C G
C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RAAAATCACTTCACTG-
-TAAGCCACTTAACATT
 C T A G C G T A C G T A C G T A C G T A G A C T A T G C G T C A A T G C C G A T A G C T A G T C C G T A T A G C A C G T A T C G A C G T
A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PB0005.1_Bbx_1/Jaspar

Match Rank:7
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:RAAAATCACTTCACTG-----
------NANTTCATTGAATTA
 C T A G C G T A C G T A C G T A C G T A G A C T A T G C G T C A A T G C C G A T A G C T A G T C C G T A T A G C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RAAAATCACTTCACTG--
-ATAACCACTTGAAAATT
 C T A G C G T A C G T A C G T A C G T A G A C T A T G C G T C A A T G C C G A T A G C T A G T C C G T A T A G C A C G T A T C G A C G T A C G T
A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:RAAAATCACTTCACTG
---MRSCACTYAA---
 C T A G C G T A C G T A C G T A C G T A G A C T A T G C G T C A A T G C C G A T A G C T A G T C C G T A T A G C A C G T A T C G
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:RAAAATCACTTCACTG-
-TAAGCCACTTGAAATT
 C T A G C G T A C G T A C G T A C G T A G A C T A T G C G T C A A T G C C G A T A G C T A G T C C G T A T A G C A C G T A T C G A C G T
A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T